Hb_000672_120

Information

Type -
Description -
Location Contig672: 225950-229212
Sequence    

Annotation

kegg
ID rcu:RCOM_0228830
description vacuolar ATP synthase subunit G plant, putative
nr
ID NP_001294895.1
description V-type proton ATPase subunit G 1 [Jatropha curcas]
swissprot
ID Q9SP55
description V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1
trembl
ID D6BR50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18540 PE=2 SV=1
Gene Ontology
ID GO:0016471
description v-type proton atpase subunit g 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53480: 225874-229444
cDNA
(Sanger)
(ID:Location)		 014_O10.ab1: 225874-229444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000672_120 0.0 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
2 Hb_004336_050 0.0621235777 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
3 Hb_007594_090 0.0842047635 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
4 Hb_172706_030 0.0874346849 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
5 Hb_005588_070 0.0998567084 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
6 Hb_000224_120 0.1022359225 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
7 Hb_001307_090 0.1038544353 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
8 Hb_001504_080 0.1079791343 - - golgi snare 11 protein, putative [Ricinus communis]
9 Hb_000364_020 0.1083331667 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
10 Hb_004374_140 0.1084637969 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_010812_010 0.1102890989 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
12 Hb_002539_090 0.1107066434 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
13 Hb_003561_030 0.1107421934 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
14 Hb_180301_010 0.110895607 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
15 Hb_124755_010 0.1112561867 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
16 Hb_002025_300 0.1121932669 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
17 Hb_000975_110 0.1145560935 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
18 Hb_011457_090 0.1172391752 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
19 Hb_008544_010 0.1174238328 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
20 Hb_000172_030 0.1184521367 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000672_120 Hb_000672_120 Hb_004336_050 Hb_004336_050 Hb_000672_120--Hb_004336_050 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_004336_050--Hb_001307_090 Hb_002539_090 Hb_002539_090 Hb_007594_090--Hb_002539_090 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_007594_090--Hb_004336_050 Hb_000751_130 Hb_000751_130 Hb_007594_090--Hb_000751_130 Hb_003561_030 Hb_003561_030 Hb_007594_090--Hb_003561_030 Hb_140543_010 Hb_140543_010 Hb_172706_030--Hb_140543_010 Hb_002878_010 Hb_002878_010 Hb_172706_030--Hb_002878_010 Hb_001504_080 Hb_001504_080 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_005588_070--Hb_004336_050 Hb_012675_070 Hb_012675_070 Hb_005588_070--Hb_012675_070 Hb_005588_070--Hb_180301_010 Hb_005588_070--Hb_001504_080 Hb_005588_070--Hb_002878_010 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_000224_120--Hb_004336_050 Hb_000224_120--Hb_000975_110 Hb_000224_120--Hb_004374_140 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_001307_090--Hb_000975_110 Hb_124755_010 Hb_124755_010 Hb_001307_090--Hb_124755_010 Hb_000024_030 Hb_000024_030 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19603 1.35637 2.02005 13.7398 5.19709 23.9654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2883 31.5661 22.9538 7.09593 7.15005

CAGE analysis