Hb_000672_130

Information

Type -
Description -
Location Contig672: 237575-240368
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22870g
description POPTRDRAFT_770531; hypothetical protein
nr
ID XP_002315302.1
description hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
swissprot
ID P0AAD5
description Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP PE=3 SV=1
trembl
ID B9HUE6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22870g PE=4 SV=1
Gene Ontology
ID GO:0003333
description tryptophan tyrosine permease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000672_130 0.0 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
2 Hb_001300_090 0.1218794243 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
3 Hb_144838_010 0.1283246523 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
4 Hb_017640_010 0.1283666284 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
5 Hb_004643_020 0.1518851939 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
6 Hb_029510_060 0.1534910588 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
7 Hb_006827_010 0.1625826332 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
8 Hb_003414_020 0.1640372493 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
9 Hb_000208_220 0.1667207696 - - -
10 Hb_002990_020 0.1686713356 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
11 Hb_007575_010 0.1690995065 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
12 Hb_006040_140 0.1725790121 - - hypothetical protein NitaMp105 [Nicotiana tabacum]
13 Hb_006616_070 0.1729695801 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
14 Hb_008680_010 0.1767377593 - - -
15 Hb_001250_030 0.1776488817 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001761_160 0.1785107979 - - hypothetical protein VITISV_019364 [Vitis vinifera]
17 Hb_002553_030 0.1785596383 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
18 Hb_004052_130 0.1794036178 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
19 Hb_003796_010 0.1805118466 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_004951_030 0.1823456487 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000672_130 Hb_000672_130 Hb_001300_090 Hb_001300_090 Hb_000672_130--Hb_001300_090 Hb_144838_010 Hb_144838_010 Hb_000672_130--Hb_144838_010 Hb_017640_010 Hb_017640_010 Hb_000672_130--Hb_017640_010 Hb_004643_020 Hb_004643_020 Hb_000672_130--Hb_004643_020 Hb_029510_060 Hb_029510_060 Hb_000672_130--Hb_029510_060 Hb_006827_010 Hb_006827_010 Hb_000672_130--Hb_006827_010 Hb_000208_220 Hb_000208_220 Hb_001300_090--Hb_000208_220 Hb_001300_090--Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_001300_090--Hb_003796_010 Hb_001300_090--Hb_006827_010 Hb_001300_090--Hb_029510_060 Hb_007575_010 Hb_007575_010 Hb_144838_010--Hb_007575_010 Hb_144838_010--Hb_017640_010 Hb_002598_030 Hb_002598_030 Hb_144838_010--Hb_002598_030 Hb_147604_010 Hb_147604_010 Hb_144838_010--Hb_147604_010 Hb_001250_030 Hb_001250_030 Hb_144838_010--Hb_001250_030 Hb_017640_010--Hb_007575_010 Hb_099878_040 Hb_099878_040 Hb_017640_010--Hb_099878_040 Hb_008680_010 Hb_008680_010 Hb_017640_010--Hb_008680_010 Hb_004899_210 Hb_004899_210 Hb_017640_010--Hb_004899_210 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_023738_010 Hb_023738_010 Hb_029510_060--Hb_023738_010 Hb_093388_010 Hb_093388_010 Hb_029510_060--Hb_093388_010 Hb_119832_010 Hb_119832_010 Hb_029510_060--Hb_119832_010 Hb_029510_060--Hb_001250_030 Hb_000951_070 Hb_000951_070 Hb_029510_060--Hb_000951_070 Hb_029510_060--Hb_003796_010 Hb_006616_070 Hb_006616_070 Hb_006827_010--Hb_006616_070 Hb_000138_180 Hb_000138_180 Hb_006827_010--Hb_000138_180 Hb_001267_020 Hb_001267_020 Hb_006827_010--Hb_001267_020 Hb_006827_010--Hb_004643_020 Hb_006827_010--Hb_002990_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.388812 0.0427855 0.0540976 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0314462 0 0 0.0197517 1.65579

CAGE analysis