Hb_000672_150

Information

Type -
Description -
Location Contig672: 274209-279616
Sequence    

Annotation

kegg
ID rcu:RCOM_0228310
description Patatin T5 precursor, putative
nr
ID XP_002529576.1
description Patatin T5 precursor, putative [Ricinus communis]
swissprot
ID Q9SV43
description Patatin-like protein 7 OS=Arabidopsis thaliana GN=PLP7 PE=2 SV=1
trembl
ID B9SUA7
description Patatin OS=Ricinus communis GN=RCOM_0228310 PE=3 SV=1
Gene Ontology
ID GO:0006629
description patatin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53481: 273654-278915 , PASA_asmbl_53482: 276363-276667 , PASA_asmbl_53484: 278306-278408
cDNA
(Sanger)
(ID:Location)		 001_C06.ab1: 279250-279555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000672_150 0.0 - - Patatin T5 precursor, putative [Ricinus communis]
2 Hb_001959_120 0.1559061049 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
3 Hb_001113_030 0.1666168866 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
4 Hb_168707_040 0.1743817492 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_001472_130 0.1796974664 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
6 Hb_000671_170 0.179868245 - - kinase, putative [Ricinus communis]
7 Hb_008173_030 0.1877646451 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
8 Hb_000139_100 0.1878291148 - - PREDICTED: sugar transport protein 13-like [Jatropha curcas]
9 Hb_000111_480 0.196143927 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
10 Hb_000802_110 0.2033941157 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
11 Hb_002110_240 0.205776231 - - clathrin assembly protein, putative [Ricinus communis]
12 Hb_005048_050 0.2129450632 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
13 Hb_003605_240 0.2137667795 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
14 Hb_000343_180 0.2151550569 - - NDWp3 [Podospora anserina]
15 Hb_025708_020 0.21535029 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_168319_010 0.2171820299 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
17 Hb_089032_010 0.220599942 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
18 Hb_027467_010 0.2217706782 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
19 Hb_000809_090 0.2231816612 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
20 Hb_002766_050 0.2239548885 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]

Gene co-expression network

sample Hb_000672_150 Hb_000672_150 Hb_001959_120 Hb_001959_120 Hb_000672_150--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000672_150--Hb_001113_030 Hb_168707_040 Hb_168707_040 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_008173_030 Hb_008173_030 Hb_000672_150--Hb_008173_030 Hb_000120_160 Hb_000120_160 Hb_001959_120--Hb_000120_160 Hb_001486_200 Hb_001486_200 Hb_001959_120--Hb_001486_200 Hb_000084_220 Hb_000084_220 Hb_001959_120--Hb_000084_220 Hb_011716_050 Hb_011716_050 Hb_001959_120--Hb_011716_050 Hb_002876_250 Hb_002876_250 Hb_001959_120--Hb_002876_250 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_000111_480 Hb_000111_480 Hb_001113_030--Hb_000111_480 Hb_001113_030--Hb_008173_030 Hb_001113_030--Hb_001959_120 Hb_089032_010 Hb_089032_010 Hb_001113_030--Hb_089032_010 Hb_000802_110 Hb_000802_110 Hb_168707_040--Hb_000802_110 Hb_128524_020 Hb_128524_020 Hb_168707_040--Hb_128524_020 Hb_027467_010 Hb_027467_010 Hb_168707_040--Hb_027467_010 Hb_000139_100 Hb_000139_100 Hb_168707_040--Hb_000139_100 Hb_002766_050 Hb_002766_050 Hb_168707_040--Hb_002766_050 Hb_000809_080 Hb_000809_080 Hb_001472_130--Hb_000809_080 Hb_000038_040 Hb_000038_040 Hb_001472_130--Hb_000038_040 Hb_000805_230 Hb_000805_230 Hb_001472_130--Hb_000805_230 Hb_006935_010 Hb_006935_010 Hb_001472_130--Hb_006935_010 Hb_000221_060 Hb_000221_060 Hb_001472_130--Hb_000221_060 Hb_000417_420 Hb_000417_420 Hb_001472_130--Hb_000417_420 Hb_000868_100 Hb_000868_100 Hb_000671_170--Hb_000868_100 Hb_000671_160 Hb_000671_160 Hb_000671_170--Hb_000671_160 Hb_000671_170--Hb_001959_120 Hb_000671_170--Hb_001113_030 Hb_000671_170--Hb_008173_030 Hb_002110_240 Hb_002110_240 Hb_008173_030--Hb_002110_240 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_008173_030--Hb_000868_100 Hb_000343_180 Hb_000343_180 Hb_008173_030--Hb_000343_180 Hb_002205_010 Hb_002205_010 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.563663 41.7289 7.53324 8.94618 0.266394 0.20854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.5461 12.8222 15.2153 10.7788 4.58281

CAGE analysis