Hb_000673_020

Information

Type -
Description -
Location Contig673: 65534-70691
Sequence    

Annotation

kegg
ID rcu:RCOM_0520230
description ATP synthase delta chain, mitochondrial, putative (EC:3.6.3.14)
nr
ID XP_012075179.1
description PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
swissprot
ID Q40089
description ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1
trembl
ID B9SS29
description ATP synthase delta chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_0520230 PE=3 SV=1
Gene Ontology
ID GO:0045261
description atp synthase subunit delta mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53498: 65541-70636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000673_020 0.0 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
2 Hb_013405_140 0.064169875 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
3 Hb_003880_030 0.0651530564 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
4 Hb_000175_030 0.0697369184 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
5 Hb_027654_050 0.0743958819 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
6 Hb_000934_190 0.075592618 - - SER/ARG-rich protein 34A [Theobroma cacao]
7 Hb_002016_080 0.0769486699 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
8 Hb_000125_210 0.0774034648 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
9 Hb_005656_100 0.0828194563 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008232_010 0.0847808172 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_000982_080 0.0855018234 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
12 Hb_003783_030 0.087557449 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
13 Hb_007037_020 0.0880115455 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
14 Hb_000096_150 0.0889397004 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
15 Hb_011512_040 0.0915070388 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
16 Hb_004672_010 0.0923454639 - - ecotropic viral integration site, putative [Ricinus communis]
17 Hb_003291_020 0.0925598986 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
18 Hb_001222_080 0.0928531989 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
19 Hb_000327_060 0.0929669961 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
20 Hb_011485_020 0.0931699102 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000673_020 Hb_000673_020 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_013405_140--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_013405_140--Hb_011485_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_000384_120 Hb_000384_120 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_000922_040 Hb_000922_040 Hb_003880_030--Hb_000922_040 Hb_161175_010 Hb_161175_010 Hb_000175_030--Hb_161175_010 Hb_000175_030--Hb_011021_040 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_007192_100 Hb_007192_100 Hb_000175_030--Hb_007192_100 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_003622_040 Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_005098_030 Hb_005098_030 Hb_000934_190--Hb_005098_030 Hb_008232_010 Hb_008232_010 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_000934_190--Hb_003462_120 Hb_002016_080--Hb_011485_020 Hb_002016_080--Hb_000922_040 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_002016_080--Hb_003783_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0516 10.8586 14.7841 21.8931 9.05161 10.5855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.4992 51.6824 43.9865 26.5378 26.2274

CAGE analysis