Hb_000674_010

Information

Type -
Description -
Location Contig674: 27677-41472
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15900g
description Copper-transporting ATPase RAN1 family protein
nr
ID XP_012084564.1
description PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
swissprot
ID Q9S7J8
description Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1
trembl
ID A0A067JTV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20239 PE=3 SV=1
Gene Ontology
ID GO:0016021
description copper-transporting atpase ran1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53516: 27802-40983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000674_010 0.0 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
2 Hb_003058_200 0.0769360795 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
3 Hb_003125_180 0.0812959936 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
4 Hb_002072_010 0.0826269569 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021297_020 0.0835845643 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_002851_010 0.0880427527 - - sugar transporter, putative [Ricinus communis]
7 Hb_005000_090 0.0889698381 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
8 Hb_000152_700 0.0899052862 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
9 Hb_023765_010 0.0902954543 - - calcineurin-like phosphoesterase [Manihot esculenta]
10 Hb_000649_060 0.0951490509 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
11 Hb_011032_010 0.0952140883 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_004450_070 0.0963061982 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
13 Hb_020805_180 0.0980563652 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_002027_190 0.1021848821 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
15 Hb_000723_010 0.1028686077 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_007747_170 0.1040586237 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
17 Hb_069619_010 0.1068047716 - - Aspartic proteinase precursor, putative [Ricinus communis]
18 Hb_001366_270 0.107722942 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
19 Hb_000890_070 0.108690882 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
20 Hb_135959_010 0.1088629679 - - hypothetical protein JCGZ_07060 [Jatropha curcas]

Gene co-expression network

sample Hb_000674_010 Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_000674_010--Hb_003058_200 Hb_003125_180 Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_002072_010 Hb_002072_010 Hb_000674_010--Hb_002072_010 Hb_021297_020 Hb_021297_020 Hb_000674_010--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_003058_200--Hb_002072_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_003058_200--Hb_021297_020 Hb_003058_200--Hb_002851_010 Hb_003058_200--Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_030565_110 Hb_030565_110 Hb_002072_010--Hb_030565_110 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_002072_010--Hb_005000_090 Hb_002072_010--Hb_000019_170 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_027445_020 Hb_027445_020 Hb_021297_020--Hb_027445_020 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_002851_010--Hb_000649_060 Hb_102763_010 Hb_102763_010 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_005000_090--Hb_001998_220 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.81473 19.9385 8.53902 30.2283 11.5331 9.88406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.90388 4.07294 5.90198 28.4568 24.8699

CAGE analysis