Hb_000675_040

Information

Type -
Description -
Location Contig675: 114694-117533
Sequence    

Annotation

kegg
ID cic:CICLE_v10003399mg
description hypothetical protein
nr
ID EEC71127.1
description hypothetical protein OsI_02937 [Oryza sativa Indica Group]
swissprot
ID P79102
description Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1
trembl
ID A0A0D9V358
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 cyp72a219-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53525: 116588-116980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000675_040 0.0 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
2 Hb_145211_010 0.0448857777 - - hypothetical protein M569_05648, partial [Genlisea aurea]
3 Hb_059780_010 0.0617338814 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
4 Hb_121441_010 0.1235470291 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_131320_010 0.1284147738 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
6 Hb_002122_050 0.129759595 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_007676_060 0.1339564149 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
8 Hb_000644_040 0.1492102224 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
9 Hb_000982_120 0.1525694406 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
10 Hb_002566_010 0.1526336116 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
11 Hb_000946_030 0.1649919298 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
12 Hb_001597_090 0.1709773846 - - -
13 Hb_009230_020 0.1710575613 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
14 Hb_170878_060 0.1729754826 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_002555_030 0.1736192742 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
16 Hb_000149_090 0.1839275438 - - -
17 Hb_000169_100 0.1844020043 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
18 Hb_031931_030 0.1853318598 - - lipid binding protein, putative [Ricinus communis]
19 Hb_008144_010 0.1925551844 - - hypothetical protein VITISV_015004 [Vitis vinifera]
20 Hb_135554_010 0.1947572419 - - Insulin-degrading enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_000675_040 Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_000675_040--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000675_040--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000675_040--Hb_121441_010 Hb_131320_010 Hb_131320_010 Hb_000675_040--Hb_131320_010 Hb_002122_050 Hb_002122_050 Hb_000675_040--Hb_002122_050 Hb_007676_060 Hb_007676_060 Hb_000675_040--Hb_007676_060 Hb_145211_010--Hb_059780_010 Hb_002566_010 Hb_002566_010 Hb_145211_010--Hb_002566_010 Hb_000946_030 Hb_000946_030 Hb_145211_010--Hb_000946_030 Hb_145211_010--Hb_121441_010 Hb_145211_010--Hb_002122_050 Hb_059780_010--Hb_121441_010 Hb_059780_010--Hb_002566_010 Hb_000982_120 Hb_000982_120 Hb_059780_010--Hb_000982_120 Hb_031931_030 Hb_031931_030 Hb_059780_010--Hb_031931_030 Hb_000149_090 Hb_000149_090 Hb_121441_010--Hb_000149_090 Hb_121441_010--Hb_000982_120 Hb_121441_010--Hb_002566_010 Hb_072173_010 Hb_072173_010 Hb_131320_010--Hb_072173_010 Hb_000600_080 Hb_000600_080 Hb_131320_010--Hb_000600_080 Hb_131320_010--Hb_145211_010 Hb_008144_010 Hb_008144_010 Hb_131320_010--Hb_008144_010 Hb_129046_010 Hb_129046_010 Hb_131320_010--Hb_129046_010 Hb_002122_050--Hb_059780_010 Hb_009230_020 Hb_009230_020 Hb_002122_050--Hb_009230_020 Hb_002122_050--Hb_007676_060 Hb_002122_050--Hb_131320_010 Hb_001597_090 Hb_001597_090 Hb_007676_060--Hb_001597_090 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_146930_010 Hb_146930_010 Hb_007676_060--Hb_146930_010 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_001288_050 Hb_001288_050 Hb_007676_060--Hb_001288_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0476045 0 0.0611847 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.24273 0.19617

CAGE analysis