Hb_000675_130

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig675: 270066-272032
Sequence    

Annotation

kegg
ID rcu:RCOM_0707130
description hypothetical protein
nr
ID XP_012077204.1
description PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID A0A067KP10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07606 PE=4 SV=1
Gene Ontology
ID GO:0003682
description trihelix transcription factor gtl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53530: 270423-272302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000675_130 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
2 Hb_000394_120 0.0477273262 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
3 Hb_003641_040 0.0717812848 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
4 Hb_008226_050 0.0753467 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
5 Hb_002205_220 0.0784169929 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
6 Hb_001123_180 0.0832821811 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000193_170 0.0837934001 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
8 Hb_000732_090 0.0888980303 - - cyclin d, putative [Ricinus communis]
9 Hb_006332_030 0.0915379881 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
10 Hb_000130_400 0.092645248 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
11 Hb_002110_070 0.0962216093 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
12 Hb_028995_020 0.0976693575 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
13 Hb_000375_200 0.0998474137 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
14 Hb_000853_020 0.1005724065 - - PREDICTED: endoglucanase 17 [Populus euphratica]
15 Hb_001969_030 0.1006878306 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000175_160 0.1016481655 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
17 Hb_001257_070 0.1080287322 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
18 Hb_003464_040 0.1086061778 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_001699_090 0.1092479485 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011859_010 0.109730858 - - hypothetical protein VITISV_027923 [Vitis vinifera]

Gene co-expression network

sample Hb_000675_130 Hb_000675_130 Hb_000394_120 Hb_000394_120 Hb_000675_130--Hb_000394_120 Hb_003641_040 Hb_003641_040 Hb_000675_130--Hb_003641_040 Hb_008226_050 Hb_008226_050 Hb_000675_130--Hb_008226_050 Hb_002205_220 Hb_002205_220 Hb_000675_130--Hb_002205_220 Hb_001123_180 Hb_001123_180 Hb_000675_130--Hb_001123_180 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_000394_120--Hb_001123_180 Hb_000394_120--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_000394_120--Hb_008226_050 Hb_001969_030 Hb_001969_030 Hb_003641_040--Hb_001969_030 Hb_003641_040--Hb_008226_050 Hb_000853_020 Hb_000853_020 Hb_003641_040--Hb_000853_020 Hb_003641_040--Hb_001123_180 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_000375_200 Hb_000375_200 Hb_002205_220--Hb_000375_200 Hb_028995_020 Hb_028995_020 Hb_002205_220--Hb_028995_020 Hb_002110_070 Hb_002110_070 Hb_002205_220--Hb_002110_070 Hb_000175_110 Hb_000175_110 Hb_002205_220--Hb_000175_110 Hb_001123_180--Hb_000853_020 Hb_001123_180--Hb_001969_030 Hb_000175_160 Hb_000175_160 Hb_001123_180--Hb_000175_160 Hb_000193_170--Hb_000375_200 Hb_003464_040 Hb_003464_040 Hb_000193_170--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000193_170--Hb_012368_040 Hb_000193_170--Hb_000130_400 Hb_000187_020 Hb_000187_020 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0106651 0 6.22743 2.08144 0 0.0103381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0151913 0.321944

CAGE analysis