Hb_000676_050

Information

Type -
Description -
Location Contig676: 28616-31214
Sequence    

Annotation

kegg
ID vvi:100264353
description thioredoxin domain-containing protein PLP3A
nr
ID XP_012491631.1
description PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
swissprot
ID Q8LCV1
description Thioredoxin domain-containing protein PLP3B OS=Arabidopsis thaliana GN=PLP3B PE=2 SV=1
trembl
ID F6GWT4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02390 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin domain-containing protein plp3b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53543: 28641-31185
cDNA
(Sanger)
(ID:Location)		 037_J10.ab1: 28641-30896

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_050 0.0 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
2 Hb_010968_010 0.0625794988 - - Golgi snare 12 isoform 1 [Theobroma cacao]
3 Hb_002784_050 0.0753929325 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
4 Hb_008887_050 0.0849384279 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
5 Hb_000933_150 0.0862834308 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
6 Hb_002639_150 0.086562745 - - -
7 Hb_000205_120 0.0893801265 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
8 Hb_002687_140 0.0894692261 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
9 Hb_000666_110 0.0909248174 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
10 Hb_001484_060 0.0926135151 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
11 Hb_003020_010 0.0929855558 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
12 Hb_022250_030 0.0979161167 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007007_050 0.098189891 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
14 Hb_005656_210 0.0998190433 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
15 Hb_001348_070 0.1011479616 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_001504_150 0.1018689111 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
17 Hb_003687_230 0.1018875695 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
18 Hb_000297_110 0.1024781387 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
19 Hb_002292_010 0.1030085164 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
20 Hb_007632_110 0.1036735584 - - chromatin regulatory protein sir2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000676_050 Hb_000676_050 Hb_010968_010 Hb_010968_010 Hb_000676_050--Hb_010968_010 Hb_002784_050 Hb_002784_050 Hb_000676_050--Hb_002784_050 Hb_008887_050 Hb_008887_050 Hb_000676_050--Hb_008887_050 Hb_000933_150 Hb_000933_150 Hb_000676_050--Hb_000933_150 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280 Hb_022250_030 Hb_022250_030 Hb_002784_050--Hb_022250_030 Hb_002685_140 Hb_002685_140 Hb_002784_050--Hb_002685_140 Hb_001635_170 Hb_001635_170 Hb_002784_050--Hb_001635_170 Hb_019962_030 Hb_019962_030 Hb_002784_050--Hb_019962_030 Hb_000327_120 Hb_000327_120 Hb_002784_050--Hb_000327_120 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_000933_150--Hb_008887_050 Hb_006096_040 Hb_006096_040 Hb_000933_150--Hb_006096_040 Hb_001484_060 Hb_001484_060 Hb_000933_150--Hb_001484_060 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_000205_120--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000205_120--Hb_000976_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.5746 20.3132 49.077 18.6678 67.2578 46.299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3574 40.5384 27.2511 16.275 10.2929

CAGE analysis