Hb_000676_060

Information

Type -
Description -
Location Contig676: 32814-38373
Sequence    

Annotation

kegg
ID rcu:RCOM_0534520
description Sec14 cytosolic factor, putative
nr
ID XP_002521526.1
description Sec14 cytosolic factor, putative [Ricinus communis]
swissprot
ID Q94A34
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 OS=Arabidopsis thaliana GN=SFH12 PE=2 SV=1
trembl
ID B9S6A7
description Sec14 cytosolic factor, putative OS=Ricinus communis GN=RCOM_0534520 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_060 0.0 - - Sec14 cytosolic factor, putative [Ricinus communis]
2 Hb_000016_310 0.1023203459 - - protein binding protein, putative [Ricinus communis]
3 Hb_002915_010 0.1045749649 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
4 Hb_022693_130 0.1072674889 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002150_140 0.1102596588 - - PREDICTED: girdin-like [Jatropha curcas]
6 Hb_002107_050 0.1122456696 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
7 Hb_012779_080 0.1163790962 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
8 Hb_160271_010 0.1225388313 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
9 Hb_003883_010 0.1245396963 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
10 Hb_005062_060 0.1255050038 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
11 Hb_000094_100 0.1263550504 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
12 Hb_000320_190 0.1274358747 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_029695_070 0.1277353573 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
14 Hb_000680_010 0.1282622698 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
15 Hb_031042_060 0.1299704915 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_001789_160 0.132482531 - - PREDICTED: putative transporter arsB [Jatropha curcas]
17 Hb_000645_180 0.1342189705 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
18 Hb_163950_070 0.1347183634 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
19 Hb_000260_710 0.1349528494 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
20 Hb_114893_040 0.1352637808 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_060 Hb_000676_060 Hb_000016_310 Hb_000016_310 Hb_000676_060--Hb_000016_310 Hb_002915_010 Hb_002915_010 Hb_000676_060--Hb_002915_010 Hb_022693_130 Hb_022693_130 Hb_000676_060--Hb_022693_130 Hb_002150_140 Hb_002150_140 Hb_000676_060--Hb_002150_140 Hb_002107_050 Hb_002107_050 Hb_000676_060--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_000676_060--Hb_012779_080 Hb_000016_310--Hb_002915_010 Hb_000680_010 Hb_000680_010 Hb_000016_310--Hb_000680_010 Hb_003883_010 Hb_003883_010 Hb_000016_310--Hb_003883_010 Hb_000016_310--Hb_002107_050 Hb_001021_210 Hb_001021_210 Hb_000016_310--Hb_001021_210 Hb_002915_010--Hb_012779_080 Hb_002915_010--Hb_003883_010 Hb_000320_190 Hb_000320_190 Hb_002915_010--Hb_000320_190 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_002915_010--Hb_000680_010 Hb_160271_010 Hb_160271_010 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_000555_020 Hb_000555_020 Hb_002150_140--Hb_000555_020 Hb_114310_070 Hb_114310_070 Hb_002150_140--Hb_114310_070 Hb_005496_050 Hb_005496_050 Hb_002150_140--Hb_005496_050 Hb_087313_010 Hb_087313_010 Hb_002150_140--Hb_087313_010 Hb_001438_010 Hb_001438_010 Hb_002150_140--Hb_001438_010 Hb_021650_010 Hb_021650_010 Hb_002150_140--Hb_021650_010 Hb_002107_050--Hb_003883_010 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_002107_050--Hb_160271_010 Hb_005235_070 Hb_005235_070 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.472312 0.225186 1.09892 0.63592 0.272133 0.27772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.079423 0.270784 0.236004 0.265576 0.96402

CAGE analysis