Hb_000676_140

Information

Type -
Description -
Location Contig676: 93153-95696
Sequence    

Annotation

kegg
ID rcu:RCOM_0642610
description structural constituent of ribosome, putative
nr
ID XP_002521939.1
description structural constituent of ribosome, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7H0
description Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0642610 PE=4 SV=1
Gene Ontology
ID GO:0005622
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53552: 92666-92806 , PASA_asmbl_53553: 90762-94145 , PASA_asmbl_53554: 94161-95765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_140 0.0 - - structural constituent of ribosome, putative [Ricinus communis]
2 Hb_000011_570 0.0582136613 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
3 Hb_004709_010 0.1011452678 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
4 Hb_000866_240 0.1105223266 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
5 Hb_014720_040 0.1151761004 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
6 Hb_001016_150 0.1153951011 - - Rop1 [Hevea brasiliensis]
7 Hb_001863_430 0.1211440528 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
8 Hb_003106_220 0.1215444597 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
9 Hb_062226_140 0.1222125677 - - PREDICTED: protein NEDD1 [Jatropha curcas]
10 Hb_000155_160 0.126562739 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
11 Hb_002171_060 0.1311867733 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000465_390 0.132138158 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
13 Hb_009476_020 0.1331502955 - - tryptophan biosynthesis protein, putative [Ricinus communis]
14 Hb_000327_230 0.1337328596 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
15 Hb_002192_010 0.1342785711 - - -
16 Hb_002686_110 0.135877561 - - -
17 Hb_000110_250 0.1359409593 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
18 Hb_007747_050 0.1373366953 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
19 Hb_002811_170 0.1379110525 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
20 Hb_124953_020 0.1387925188 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]

Gene co-expression network

sample Hb_000676_140 Hb_000676_140 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430 Hb_000011_570--Hb_000866_240 Hb_000011_570--Hb_001016_150 Hb_000011_570--Hb_004709_010 Hb_000185_050 Hb_000185_050 Hb_000011_570--Hb_000185_050 Hb_000011_570--Hb_014720_040 Hb_002686_110 Hb_002686_110 Hb_004709_010--Hb_002686_110 Hb_005667_040 Hb_005667_040 Hb_004709_010--Hb_005667_040 Hb_004709_010--Hb_014720_040 Hb_011330_020 Hb_011330_020 Hb_004709_010--Hb_011330_020 Hb_087749_010 Hb_087749_010 Hb_004709_010--Hb_087749_010 Hb_000866_240--Hb_001863_430 Hb_009476_020 Hb_009476_020 Hb_000866_240--Hb_009476_020 Hb_000155_160 Hb_000155_160 Hb_000866_240--Hb_000155_160 Hb_000035_370 Hb_000035_370 Hb_000866_240--Hb_000035_370 Hb_000506_070 Hb_000506_070 Hb_000866_240--Hb_000506_070 Hb_014720_040--Hb_001016_150 Hb_014720_040--Hb_005667_040 Hb_003894_070 Hb_003894_070 Hb_014720_040--Hb_003894_070 Hb_000836_470 Hb_000836_470 Hb_014720_040--Hb_000836_470 Hb_000005_090 Hb_000005_090 Hb_014720_040--Hb_000005_090 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_001016_150--Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_001863_430--Hb_002078_140 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62938 3.27283 5.49658 5.96959 3.48356 4.57886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82172 13.685 0.992449 4.23463 3.30082

CAGE analysis