Hb_000676_160

Information

Type -
Description -
Location Contig676: 109925-116879
Sequence    

Annotation

kegg
ID rcu:RCOM_0533450
description folate carrier protein, putative
nr
ID XP_002521509.1
description folate carrier protein, putative [Ricinus communis]
swissprot
ID Q7XA87
description Folate transporter 1, chloroplastic OS=Arabidopsis thaliana GN=FOLT1 PE=2 SV=1
trembl
ID B9S690
description Folate carrier protein, putative OS=Ricinus communis GN=RCOM_0533450 PE=3 SV=1
Gene Ontology
ID GO:0009941
description folate transporter chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53558: 111331-111699 , PASA_asmbl_53559: 112455-115325 , PASA_asmbl_53560: 113562-115322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_160 0.0 - - folate carrier protein, putative [Ricinus communis]
2 Hb_174865_010 0.0533499089 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
3 Hb_000735_040 0.0690879541 - - 60S ribosomal protein L32A [Hevea brasiliensis]
4 Hb_002798_020 0.0740277811 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
5 Hb_007065_010 0.0769524586 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
6 Hb_086639_090 0.0791861095 - - 60S ribosomal protein L7a, putative [Ricinus communis]
7 Hb_007120_090 0.0814046713 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_003018_020 0.0816309747 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
9 Hb_000093_110 0.0817171356 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
10 Hb_179296_010 0.083139122 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
11 Hb_009476_020 0.0847940252 - - tryptophan biosynthesis protein, putative [Ricinus communis]
12 Hb_003494_050 0.0872579774 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
13 Hb_003226_100 0.0883304619 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
14 Hb_000506_070 0.0883865403 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
15 Hb_004157_030 0.0884573902 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_000735_090 0.0902368733 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
17 Hb_000265_050 0.093278871 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
18 Hb_001789_050 0.0945738612 - - 60S ribosomal protein L36-2 [Morus notabilis]
19 Hb_007441_300 0.0950520909 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000948_220 0.0959971934 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]

Gene co-expression network

sample Hb_000676_160 Hb_000676_160 Hb_174865_010 Hb_174865_010 Hb_000676_160--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090 Hb_174865_010--Hb_000735_040 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_000016_080 Hb_000016_080 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_000134_070 Hb_000134_070 Hb_086639_090--Hb_000134_070 Hb_000136_170 Hb_000136_170 Hb_086639_090--Hb_000136_170 Hb_004543_040 Hb_004543_040 Hb_086639_090--Hb_004543_040 Hb_006541_010 Hb_006541_010 Hb_086639_090--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_086639_090--Hb_004567_120 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17329 0.576049 1.61922 1.62192 1.09764 1.56172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18117 7.26339 1.61011 1.60321 1.50413

CAGE analysis