Hb_000676_220

Information

Type -
Description -
Location Contig676: 164143-168673
Sequence    

Annotation

kegg
ID rcu:RCOM_0533080
description ADP-ribosylation factor, putative
nr
ID XP_002521502.1
description ADP-ribosylation factor, putative [Ricinus communis]
swissprot
ID Q9ZPX1
description ADP-ribosylation factor-like protein 2 OS=Arabidopsis thaliana GN=ARL2 PE=2 SV=1
trembl
ID B9S683
description ADP-ribosylation factor, putative OS=Ricinus communis GN=RCOM_0533080 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53574: 164071-168659 , PASA_asmbl_53575: 164032-168645 , PASA_asmbl_53576: 164148-168659 , PASA_asmbl_53577: 164064-168649
cDNA
(Sanger)
(ID:Location)		 001_K06.ab1: 164032-166935 , 002_J02.ab1: 164032-166850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_220 0.0 - - ADP-ribosylation factor, putative [Ricinus communis]
2 Hb_000412_110 0.0515618899 - - Rop4 [Hevea brasiliensis]
3 Hb_000418_180 0.0577427168 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004223_130 0.0905137921 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006824_020 0.0910439287 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
6 Hb_000107_390 0.0916798103 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
7 Hb_001671_080 0.0925882057 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_000732_260 0.0934361309 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
9 Hb_000771_110 0.0936172568 - - protein phosphatase 2C [Hevea brasiliensis]
10 Hb_000282_060 0.0954223065 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
11 Hb_001776_110 0.0966099899 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
12 Hb_007908_020 0.0974579422 - - zinc finger family protein [Populus trichocarpa]
13 Hb_000025_200 0.098190492 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
14 Hb_006775_080 0.0982077964 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
15 Hb_007152_020 0.0982758464 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
16 Hb_012340_030 0.0987280182 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
17 Hb_006569_020 0.0993125144 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
18 Hb_023386_080 0.0995704358 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
19 Hb_003777_180 0.0995794765 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
20 Hb_000041_080 0.099771624 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000676_220 Hb_000676_220 Hb_000412_110 Hb_000412_110 Hb_000676_220--Hb_000412_110 Hb_000418_180 Hb_000418_180 Hb_000676_220--Hb_000418_180 Hb_004223_130 Hb_004223_130 Hb_000676_220--Hb_004223_130 Hb_006824_020 Hb_006824_020 Hb_000676_220--Hb_006824_020 Hb_000107_390 Hb_000107_390 Hb_000676_220--Hb_000107_390 Hb_001671_080 Hb_001671_080 Hb_000676_220--Hb_001671_080 Hb_000412_110--Hb_000418_180 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000412_110--Hb_000329_040 Hb_000041_080 Hb_000041_080 Hb_000412_110--Hb_000041_080 Hb_002529_100 Hb_002529_100 Hb_000412_110--Hb_002529_100 Hb_007152_020 Hb_007152_020 Hb_000418_180--Hb_007152_020 Hb_000418_180--Hb_000107_390 Hb_000500_130 Hb_000500_130 Hb_000418_180--Hb_000500_130 Hb_000173_170 Hb_000173_170 Hb_000418_180--Hb_000173_170 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_158092_070 Hb_158092_070 Hb_004223_130--Hb_158092_070 Hb_004223_130--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_004223_130--Hb_001030_120 Hb_002272_250 Hb_002272_250 Hb_004223_130--Hb_002272_250 Hb_006775_080 Hb_006775_080 Hb_006824_020--Hb_006775_080 Hb_001767_100 Hb_001767_100 Hb_006824_020--Hb_001767_100 Hb_000732_260 Hb_000732_260 Hb_006824_020--Hb_000732_260 Hb_021068_050 Hb_021068_050 Hb_006824_020--Hb_021068_050 Hb_006569_020 Hb_006569_020 Hb_006824_020--Hb_006569_020 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_003052_100 Hb_003052_100 Hb_001671_080--Hb_003052_100 Hb_001671_080--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_001671_080--Hb_000975_290 Hb_007908_020 Hb_007908_020 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
247.333 40.7448 45.0239 38.4578 149.419 123.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
211.189 152.952 177.23 42.2445 18.5941

CAGE analysis