Hb_000676_230

Information

Type -
Description -
Location Contig676: 179820-186337
Sequence    

Annotation

kegg
ID tcc:TCM_000280
description Beta-galactosidase 3 isoform 1
nr
ID XP_012078404.1
description PREDICTED: beta-galactosidase 3 [Jatropha curcas]
swissprot
ID Q9SCV9
description Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1
trembl
ID A0A061DGU4
description Beta-galactosidase OS=Theobroma cacao GN=TCM_000280 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53578: 179979-185804 , PASA_asmbl_53579: 183459-183805 , PASA_asmbl_53580: 183833-184001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_230 0.0 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
2 Hb_004032_290 0.0673690346 - - protein binding protein, putative [Ricinus communis]
3 Hb_010142_060 0.070133797 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_000368_050 0.0713806841 - - beta-galactosidase, putative [Ricinus communis]
5 Hb_133974_010 0.0727432244 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
6 Hb_004650_120 0.0735241248 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
7 Hb_000364_090 0.0797114062 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
8 Hb_000903_040 0.0824787905 - - PREDICTED: pirin-like protein [Jatropha curcas]
9 Hb_000417_210 0.0836914031 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005711_030 0.0852992789 - - hypothetical protein RCOM_0460020 [Ricinus communis]
11 Hb_000009_280 0.0862527453 - - Calmodulin, putative [Ricinus communis]
12 Hb_000395_310 0.0888115984 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_138585_010 0.0917731355 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
14 Hb_004020_030 0.0919634771 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
15 Hb_001534_140 0.0929983691 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
16 Hb_000230_410 0.093040999 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
17 Hb_007185_050 0.0963528528 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
18 Hb_002874_200 0.1010643697 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
19 Hb_000003_280 0.1027425255 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009252_070 0.1032023852 - - hypothetical protein JCGZ_11488 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_230 Hb_000676_230 Hb_004032_290 Hb_004032_290 Hb_000676_230--Hb_004032_290 Hb_010142_060 Hb_010142_060 Hb_000676_230--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_000676_230--Hb_000368_050 Hb_133974_010 Hb_133974_010 Hb_000676_230--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_000676_230--Hb_004650_120 Hb_000364_090 Hb_000364_090 Hb_000676_230--Hb_000364_090 Hb_002874_200 Hb_002874_200 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_007185_050 Hb_007185_050 Hb_004032_290--Hb_007185_050 Hb_000395_310 Hb_000395_310 Hb_004032_290--Hb_000395_310 Hb_000230_410 Hb_000230_410 Hb_004032_290--Hb_000230_410 Hb_001534_140 Hb_001534_140 Hb_010142_060--Hb_001534_140 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_010142_060--Hb_000368_050 Hb_010142_060--Hb_004032_290 Hb_010142_060--Hb_000395_310 Hb_182869_010 Hb_182869_010 Hb_000368_050--Hb_182869_010 Hb_000368_050--Hb_001534_140 Hb_047612_010 Hb_047612_010 Hb_000368_050--Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_000368_050--Hb_009252_070 Hb_002973_050 Hb_002973_050 Hb_133974_010--Hb_002973_050 Hb_005711_030 Hb_005711_030 Hb_133974_010--Hb_005711_030 Hb_004917_020 Hb_004917_020 Hb_133974_010--Hb_004917_020 Hb_147006_010 Hb_147006_010 Hb_133974_010--Hb_147006_010 Hb_133974_010--Hb_004032_290 Hb_000009_280 Hb_000009_280 Hb_004650_120--Hb_000009_280 Hb_001511_220 Hb_001511_220 Hb_004650_120--Hb_001511_220 Hb_004650_120--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004650_120--Hb_001104_060 Hb_004650_120--Hb_007185_050 Hb_004032_190 Hb_004032_190 Hb_000364_090--Hb_004032_190 Hb_000417_210 Hb_000417_210 Hb_000364_090--Hb_000417_210 Hb_000364_090--Hb_133974_010 Hb_001289_070 Hb_001289_070 Hb_000364_090--Hb_001289_070 Hb_000364_090--Hb_005711_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.036379 8.25436 28.0883 106.179 0.0325385 0.481949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0184453 0.0435427 0.0276463 5.65581 54.3107

CAGE analysis