Hb_000676_240

Information

Type -
Description -
Location Contig676: 188800-190307
Sequence    

Annotation

kegg
ID tcc:TCM_000279
description Thioredoxin H-type 1, H1,TRX1
nr
ID AEC03316.1
description thioredoxin H-type 2 [Hevea brasiliensis]
swissprot
ID Q43636
description Thioredoxin H-type OS=Ricinus communis PE=3 SV=1
trembl
ID I1SSI7
description Thioredoxin H-type 2 OS=Hevea brasiliensis GN=TrxH2 PE=2 SV=1
Gene Ontology
ID GO:0005829
description thioredoxin h-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53582: 188686-190181 , PASA_asmbl_53583: 188686-190174 , PASA_asmbl_53584: 188686-189752 , PASA_asmbl_53585: 189814-190029
cDNA
(Sanger)
(ID:Location)		 003_A08.ab1: 188852-190176 , 009_B19.ab1: 188967-190172 , 020_K18.ab1: 188860-190181 , 022_O24.ab1: 189009-190172 , 024_C09.ab1: 188816-190174 , 024_O03.ab1: 189296-190168 , 025_N12.ab1: 188859-190172 , 026_G02.ab1: 188999-190171 , 030_C09.ab1: 188860-190181 , 040_L11.ab1: 188794-190181 , 043_F01.ab1: 188836-190172 , 045_M16.ab1: 188888-190172 , 046_E12.ab1: 188809-190172 , 047_N10.ab1: 188898-190172 , 049_C09.ab1: 188890-190172 , 049_F16.ab1: 188809-190172 , 052_B02.ab1: 188860-190174

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_240 0.0 - - thioredoxin H-type 2 [Hevea brasiliensis]
2 Hb_002326_180 0.1039139594 - - Protein Z, putative [Ricinus communis]
3 Hb_017862_010 0.1044805033 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
4 Hb_002918_140 0.1170385127 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
5 Hb_005841_040 0.1183509959 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
6 Hb_002045_230 0.1224042705 - - Ammonium transporter 2 [Theobroma cacao]
7 Hb_001123_120 0.122818848 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
8 Hb_001052_030 0.1280444634 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
9 Hb_005841_050 0.1291493418 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
10 Hb_000106_090 0.1292116472 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
11 Hb_000352_140 0.1296231695 - - -
12 Hb_011245_020 0.134879531 - - Ferrochelatase [Medicago truncatula]
13 Hb_021409_090 0.1354096523 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
14 Hb_002876_360 0.1358119753 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
15 Hb_000035_440 0.1363276657 - - -
16 Hb_003043_120 0.1389607174 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002007_050 0.1397084314 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
18 Hb_001386_050 0.1419298036 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
19 Hb_034585_050 0.1419369427 - - -
20 Hb_002217_450 0.1423112934 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_240 Hb_000676_240 Hb_002326_180 Hb_002326_180 Hb_000676_240--Hb_002326_180 Hb_017862_010 Hb_017862_010 Hb_000676_240--Hb_017862_010 Hb_002918_140 Hb_002918_140 Hb_000676_240--Hb_002918_140 Hb_005841_040 Hb_005841_040 Hb_000676_240--Hb_005841_040 Hb_002045_230 Hb_002045_230 Hb_000676_240--Hb_002045_230 Hb_001123_120 Hb_001123_120 Hb_000676_240--Hb_001123_120 Hb_000617_050 Hb_000617_050 Hb_002326_180--Hb_000617_050 Hb_000106_090 Hb_000106_090 Hb_002326_180--Hb_000106_090 Hb_002326_180--Hb_001123_120 Hb_002326_180--Hb_002045_230 Hb_002876_360 Hb_002876_360 Hb_002326_180--Hb_002876_360 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_000069_100 Hb_000069_100 Hb_017862_010--Hb_000069_100 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_001386_050 Hb_001386_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_002918_140--Hb_017862_010 Hb_001102_250 Hb_001102_250 Hb_005841_040--Hb_001102_250 Hb_005841_040--Hb_002045_230 Hb_011245_020 Hb_011245_020 Hb_005841_040--Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_005841_040--Hb_003043_120 Hb_002759_240 Hb_002759_240 Hb_005841_040--Hb_002759_240 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
218.046 30.8188 62.3995 94.8084 360.513 263.821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
629.379 1589.44 727.983 184.151 39.194

CAGE analysis