Hb_000676_250

Information

Type -
Description -
Location Contig676: 192025-193781
Sequence    

Annotation

kegg
ID tcc:TCM_000278
description RTE1 isoform 1
nr
ID XP_012078400.1
description PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
swissprot
ID Q9SD42
description Protein RTE1-HOMOLOG OS=Arabidopsis thaliana GN=RTH PE=2 SV=1
trembl
ID A0A067KCD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13671 PE=4 SV=1
Gene Ontology
ID GO:0006661
description protein rte1-homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53586: 191837-195563 , PASA_asmbl_53587: 191963-193594
cDNA
(Sanger)
(ID:Location)		 013_I21.ab1: 192129-195563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_250 0.0 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
2 Hb_003177_030 0.0596257203 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
3 Hb_023344_120 0.0603709479 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
4 Hb_027380_130 0.0680795096 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
5 Hb_000019_030 0.0708291692 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
6 Hb_001711_020 0.0754789343 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
7 Hb_005144_160 0.0764498727 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
8 Hb_003206_070 0.0765399578 - - organic anion transporter, putative [Ricinus communis]
9 Hb_001159_130 0.0783121004 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
10 Hb_005357_080 0.079231438 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
11 Hb_001009_270 0.0825315296 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
12 Hb_000003_250 0.0830550999 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_026198_070 0.0834023529 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
14 Hb_000172_290 0.0834237733 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
15 Hb_008511_130 0.0865815775 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
16 Hb_008748_040 0.0867610708 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
17 Hb_000599_250 0.0877001267 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
18 Hb_000618_040 0.0878794817 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
19 Hb_001300_150 0.088009749 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
20 Hb_006455_120 0.0882435828 - - n6-DNA-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000676_250 Hb_000676_250 Hb_003177_030 Hb_003177_030 Hb_000676_250--Hb_003177_030 Hb_023344_120 Hb_023344_120 Hb_000676_250--Hb_023344_120 Hb_027380_130 Hb_027380_130 Hb_000676_250--Hb_027380_130 Hb_000019_030 Hb_000019_030 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_005144_160 Hb_005144_160 Hb_000676_250--Hb_005144_160 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_003177_030--Hb_005144_160 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_003177_030--Hb_000019_030 Hb_006634_070 Hb_006634_070 Hb_023344_120--Hb_006634_070 Hb_006455_120 Hb_006455_120 Hb_023344_120--Hb_006455_120 Hb_023344_120--Hb_027380_130 Hb_011995_010 Hb_011995_010 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070 Hb_001300_150 Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_027380_130--Hb_001159_130 Hb_065525_040 Hb_065525_040 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040 Hb_000599_250 Hb_000599_250 Hb_001711_020--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_001711_020--Hb_004934_100 Hb_001711_020--Hb_001300_150 Hb_002600_090 Hb_002600_090 Hb_001711_020--Hb_002600_090 Hb_001971_010 Hb_001971_010 Hb_001711_020--Hb_001971_010 Hb_000375_350 Hb_000375_350 Hb_001711_020--Hb_000375_350 Hb_000580_180 Hb_000580_180 Hb_005144_160--Hb_000580_180 Hb_007691_030 Hb_007691_030 Hb_005144_160--Hb_007691_030 Hb_002200_080 Hb_002200_080 Hb_005144_160--Hb_002200_080 Hb_002863_050 Hb_002863_050 Hb_005144_160--Hb_002863_050 Hb_005144_160--Hb_006634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4525 19.4965 28.4443 41.4619 31.5547 36.8437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.0707 31.0089 52.1954 25.503 26.9223

CAGE analysis