Hb_000676_270

Information

Type transcription factor
Description TF Family: SRS
Location Contig676: 228072-229953
Sequence    

Annotation

kegg
ID tcc:TCM_000274
description Lateral root primordium protein-related, putative
nr
ID XP_012078391.1
description PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
swissprot
ID Q9SD40
description Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2
trembl
ID A0A067K8V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_270 0.0 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
2 Hb_000802_110 0.2375720541 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_000672_150 0.2401716166 - - Patatin T5 precursor, putative [Ricinus communis]
4 Hb_002660_060 0.2476805459 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
5 Hb_168707_040 0.2616729069 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_000343_180 0.263687329 - - NDWp3 [Podospora anserina]
7 Hb_005048_050 0.2669071403 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
8 Hb_002805_020 0.2744619662 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
9 Hb_004032_420 0.2795947228 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
10 Hb_027467_010 0.2799001157 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
11 Hb_014613_010 0.2832214523 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_032264_090 0.2856057341 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
13 Hb_161785_010 0.2861503799 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
14 Hb_000042_250 0.293331388 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
15 Hb_001449_050 0.2935861737 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002486_010 0.2957653238 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
17 Hb_000638_210 0.2958715705 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
18 Hb_000210_090 0.2982188862 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
19 Hb_031862_040 0.2984097639 - - purine transporter, putative [Ricinus communis]
20 Hb_004020_060 0.2984306916 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000676_270 Hb_000676_270 Hb_000802_110 Hb_000802_110 Hb_000676_270--Hb_000802_110 Hb_000672_150 Hb_000672_150 Hb_000676_270--Hb_000672_150 Hb_002660_060 Hb_002660_060 Hb_000676_270--Hb_002660_060 Hb_168707_040 Hb_168707_040 Hb_000676_270--Hb_168707_040 Hb_000343_180 Hb_000343_180 Hb_000676_270--Hb_000343_180 Hb_005048_050 Hb_005048_050 Hb_000676_270--Hb_005048_050 Hb_000802_110--Hb_000343_180 Hb_000802_110--Hb_168707_040 Hb_000802_110--Hb_000672_150 Hb_014613_010 Hb_014613_010 Hb_000802_110--Hb_014613_010 Hb_002686_120 Hb_002686_120 Hb_000802_110--Hb_002686_120 Hb_001894_090 Hb_001894_090 Hb_000802_110--Hb_001894_090 Hb_001959_120 Hb_001959_120 Hb_000672_150--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000672_150--Hb_001113_030 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_008173_030 Hb_008173_030 Hb_000672_150--Hb_008173_030 Hb_002805_020 Hb_002805_020 Hb_002660_060--Hb_002805_020 Hb_000671_160 Hb_000671_160 Hb_002660_060--Hb_000671_160 Hb_002660_060--Hb_000671_170 Hb_002486_010 Hb_002486_010 Hb_002660_060--Hb_002486_010 Hb_000554_030 Hb_000554_030 Hb_002660_060--Hb_000554_030 Hb_128524_020 Hb_128524_020 Hb_168707_040--Hb_128524_020 Hb_027467_010 Hb_027467_010 Hb_168707_040--Hb_027467_010 Hb_000139_100 Hb_000139_100 Hb_168707_040--Hb_000139_100 Hb_002766_050 Hb_002766_050 Hb_168707_040--Hb_002766_050 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_000975_330 Hb_000975_330 Hb_005048_050--Hb_000975_330 Hb_005048_050--Hb_001113_030 Hb_065500_040 Hb_065500_040 Hb_005048_050--Hb_065500_040 Hb_000111_300 Hb_000111_300 Hb_005048_050--Hb_000111_300 Hb_005048_050--Hb_000672_150 Hb_002301_200 Hb_002301_200 Hb_005048_050--Hb_002301_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295527 10.8714 0.24759 0.655356 0 0.0279472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08848 3.604 7.84598 3.30335 0.38697

CAGE analysis