Hb_000676_310

Information

Type -
Description -
Location Contig676: 258554-259012
Sequence    

Annotation

kegg
ID brp:103851097
description uncharacterized LOC103851097
nr
ID CDY16941.1
description BnaC09g40680D [Brassica napus]
swissprot
ID Q9USH2
description UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP31B10.02 PE=3 SV=1
trembl
ID A0A078FVE3
description BnaC09g40680D protein OS=Brassica napus GN=BnaC09g40680D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53593: 258446-258941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_310 0.0 - - BnaC09g40680D [Brassica napus]
2 Hb_001718_030 0.0881422423 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
3 Hb_001431_080 0.0894393735 - - 40S ribosomal protein S11, putative [Ricinus communis]
4 Hb_001188_030 0.0895810708 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_006355_040 0.0905570078 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
6 Hb_011236_010 0.1003802661 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
7 Hb_132840_140 0.1042990964 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
8 Hb_006198_070 0.1142420901 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
9 Hb_000788_010 0.1236154708 - - 40S ribosomal protein S16A [Hevea brasiliensis]
10 Hb_006478_160 0.125599064 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
11 Hb_000731_190 0.1259277696 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
12 Hb_005843_140 0.1269382344 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
13 Hb_001373_060 0.1275231886 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
14 Hb_000676_390 0.127815193 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
15 Hb_002811_170 0.1289464569 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
16 Hb_004057_010 0.1290031963 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
17 Hb_026527_050 0.1301577176 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
18 Hb_000424_200 0.1304136317 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
19 Hb_012022_140 0.134457491 - - ADP,ATP carrier protein, putative [Ricinus communis]
20 Hb_004223_040 0.1353487332 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000676_310 Hb_000676_310 Hb_001718_030 Hb_001718_030 Hb_000676_310--Hb_001718_030 Hb_001431_080 Hb_001431_080 Hb_000676_310--Hb_001431_080 Hb_001188_030 Hb_001188_030 Hb_000676_310--Hb_001188_030 Hb_006355_040 Hb_006355_040 Hb_000676_310--Hb_006355_040 Hb_011236_010 Hb_011236_010 Hb_000676_310--Hb_011236_010 Hb_132840_140 Hb_132840_140 Hb_000676_310--Hb_132840_140 Hb_001718_030--Hb_001188_030 Hb_001718_030--Hb_006355_040 Hb_002060_010 Hb_002060_010 Hb_001718_030--Hb_002060_010 Hb_001718_030--Hb_001431_080 Hb_000676_390 Hb_000676_390 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_001431_080--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_001431_080--Hb_015299_030 Hb_001431_080--Hb_132840_140 Hb_001431_080--Hb_000676_390 Hb_001188_030--Hb_000676_390 Hb_001188_030--Hb_006355_040 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070 Hb_004223_040 Hb_004223_040 Hb_011236_010--Hb_004223_040 Hb_003929_150 Hb_003929_150 Hb_011236_010--Hb_003929_150 Hb_000699_090 Hb_000699_090 Hb_011236_010--Hb_000699_090 Hb_006478_160 Hb_006478_160 Hb_011236_010--Hb_006478_160 Hb_011236_010--Hb_001718_030 Hb_000134_320 Hb_000134_320 Hb_132840_140--Hb_000134_320 Hb_132840_140--Hb_004223_040 Hb_132840_140--Hb_001188_030 Hb_132840_140--Hb_015299_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45775 5.93386 13.6364 9.55504 5.55301 5.51769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73715 35.3214 14.1712 7.15341 6.46818

CAGE analysis