Hb_000676_330

Information

Type -
Description -
Location Contig676: 264863-272630
Sequence    

Annotation

kegg
ID rcu:RCOM_0779060
description protein with unknown function
nr
ID XP_002533303.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q96EZ8
description Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1
trembl
ID B9T4Y4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0779060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53596: 270193-272394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_330 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000206_160 0.0545265816 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
3 Hb_002768_050 0.0579003328 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_000445_060 0.0588569005 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
5 Hb_000996_020 0.0598358284 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_000868_120 0.0652998917 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
7 Hb_027506_010 0.0669048854 - - PREDICTED: cullin-4 [Jatropha curcas]
8 Hb_001157_160 0.0669290834 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
9 Hb_000795_040 0.0676559883 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
10 Hb_000510_360 0.0678210538 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
11 Hb_001673_050 0.0678214713 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
12 Hb_000085_210 0.0682304459 - - DNA topoisomerase type I, putative [Ricinus communis]
13 Hb_000373_170 0.0690407764 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
14 Hb_005701_050 0.0697251106 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
15 Hb_000099_040 0.0703205321 - - unnamed protein product [Coffea canephora]
16 Hb_001723_010 0.0724138319 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
17 Hb_000661_120 0.072467186 - - cap binding protein, putative [Ricinus communis]
18 Hb_004044_050 0.0737420641 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
19 Hb_000110_350 0.0751463859 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
20 Hb_004517_020 0.0754041978 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_330 Hb_000676_330 Hb_000206_160 Hb_000206_160 Hb_000676_330--Hb_000206_160 Hb_002768_050 Hb_002768_050 Hb_000676_330--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000676_330--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000676_330--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000676_330--Hb_000868_120 Hb_027506_010 Hb_027506_010 Hb_000676_330--Hb_027506_010 Hb_000206_160--Hb_027506_010 Hb_003758_010 Hb_003758_010 Hb_000206_160--Hb_003758_010 Hb_005701_050 Hb_005701_050 Hb_000206_160--Hb_005701_050 Hb_000206_160--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_000206_160--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_002768_050--Hb_000110_350 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210 Hb_000445_060--Hb_000996_020 Hb_000445_060--Hb_000868_120 Hb_000445_060--Hb_000110_350 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000445_060--Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000868_120--Hb_000661_120 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34724 15.1539 11.8632 8.65998 9.17491 6.10411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03491 6.80537 6.63199 10.6684 12.0099

CAGE analysis