Hb_000676_360

Information

Type -
Description -
Location Contig676: 290856-292766
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13690g
description POPTRDRAFT_655398; hypothetical protein
nr
ID XP_002310286.1
description hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9HFC7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13690g PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_360 0.0 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
2 Hb_004313_010 0.0757540668 - - PREDICTED: patatin-like protein 1 [Prunus mume]
3 Hb_009847_010 0.0758578513 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
4 Hb_000847_090 0.0791058333 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
5 Hb_000375_220 0.0805967519 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
6 Hb_186458_010 0.0821388004 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
7 Hb_000556_060 0.0839136903 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
8 Hb_031012_030 0.0886990992 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
9 Hb_083963_010 0.0899160076 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
10 Hb_017110_030 0.0995270188 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
11 Hb_024071_030 0.1000031447 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
12 Hb_001863_330 0.1002568454 - - RNA-binding region-containing protein, putative [Ricinus communis]
13 Hb_000321_110 0.1004755054 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
14 Hb_002030_010 0.1016503395 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
15 Hb_000134_130 0.1026129018 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
16 Hb_031022_030 0.1048472106 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
17 Hb_016333_010 0.1052033862 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
18 Hb_000320_010 0.1111930884 - - conserved hypothetical protein [Ricinus communis]
19 Hb_019516_010 0.1120513467 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
20 Hb_000127_240 0.1132132545 - - SAUR39 [Populus tomentosa]

Gene co-expression network

sample Hb_000676_360 Hb_000676_360 Hb_004313_010 Hb_004313_010 Hb_000676_360--Hb_004313_010 Hb_009847_010 Hb_009847_010 Hb_000676_360--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000676_360--Hb_000847_090 Hb_000375_220 Hb_000375_220 Hb_000676_360--Hb_000375_220 Hb_186458_010 Hb_186458_010 Hb_000676_360--Hb_186458_010 Hb_000556_060 Hb_000556_060 Hb_000676_360--Hb_000556_060 Hb_031012_030 Hb_031012_030 Hb_004313_010--Hb_031012_030 Hb_004313_010--Hb_186458_010 Hb_017110_030 Hb_017110_030 Hb_004313_010--Hb_017110_030 Hb_083963_010 Hb_083963_010 Hb_004313_010--Hb_083963_010 Hb_005353_010 Hb_005353_010 Hb_004313_010--Hb_005353_010 Hb_009847_010--Hb_000556_060 Hb_009847_010--Hb_000847_090 Hb_024071_030 Hb_024071_030 Hb_009847_010--Hb_024071_030 Hb_007044_240 Hb_007044_240 Hb_009847_010--Hb_007044_240 Hb_000127_240 Hb_000127_240 Hb_009847_010--Hb_000127_240 Hb_009847_010--Hb_000375_220 Hb_000847_090--Hb_000556_060 Hb_000847_090--Hb_000375_220 Hb_000847_090--Hb_007044_240 Hb_002307_140 Hb_002307_140 Hb_000847_090--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_000847_090--Hb_006711_030 Hb_002030_010 Hb_002030_010 Hb_000375_220--Hb_002030_010 Hb_000375_220--Hb_000127_240 Hb_006614_020 Hb_006614_020 Hb_000375_220--Hb_006614_020 Hb_003006_070 Hb_003006_070 Hb_000375_220--Hb_003006_070 Hb_186458_010--Hb_017110_030 Hb_186458_010--Hb_083963_010 Hb_186458_010--Hb_031012_030 Hb_023582_030 Hb_023582_030 Hb_186458_010--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_186458_010--Hb_000742_070 Hb_000556_060--Hb_024071_030 Hb_000556_060--Hb_007044_240 Hb_009663_020 Hb_009663_020 Hb_000556_060--Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_000556_060--Hb_007120_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.485868 0.526394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00743473 0.197108

CAGE analysis