Hb_000676_380

Information

Type -
Description -
Location Contig676: 323161-325062
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11950g
description cytochrome P450 family protein
nr
ID XP_006383141.1
description cytochrome P450 family protein [Populus trichocarpa]
swissprot
ID Q42600
description Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=1 SV=1
trembl
ID B9MXJ3
description Cytochrome P450 family protein OS=Populus trichocarpa GN=POPTR_0005s11950g PE=4 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_380 0.0 - - cytochrome P450 family protein [Populus trichocarpa]
2 Hb_003090_230 0.0776606865 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020805_110 0.0873445868 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_003171_070 0.0906181137 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
5 Hb_001856_150 0.0957483006 - - -
6 Hb_004875_040 0.1036415361 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
7 Hb_009711_040 0.1056539701 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
8 Hb_182831_020 0.1205342837 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_161346_010 0.1210930676 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
10 Hb_021418_010 0.1219045029 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
11 Hb_001596_030 0.1220635962 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
12 Hb_006314_020 0.1271803738 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
13 Hb_000098_210 0.1289188662 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
14 Hb_001775_130 0.1304003878 - - Prephenate dehydratase [Hevea brasiliensis]
15 Hb_003435_070 0.1311532193 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
16 Hb_148817_010 0.1331245617 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
17 Hb_001522_050 0.1349062853 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
18 Hb_081282_010 0.1363594705 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
19 Hb_000032_330 0.1370516023 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011139_010 0.1393228382 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000676_380 Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_000676_380--Hb_003090_230 Hb_020805_110 Hb_020805_110 Hb_000676_380--Hb_020805_110 Hb_003171_070 Hb_003171_070 Hb_000676_380--Hb_003171_070 Hb_001856_150 Hb_001856_150 Hb_000676_380--Hb_001856_150 Hb_004875_040 Hb_004875_040 Hb_000676_380--Hb_004875_040 Hb_009711_040 Hb_009711_040 Hb_000676_380--Hb_009711_040 Hb_003090_230--Hb_020805_110 Hb_003090_230--Hb_009711_040 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_003090_230--Hb_004875_040 Hb_001596_030 Hb_001596_030 Hb_003090_230--Hb_001596_030 Hb_020805_110--Hb_009711_040 Hb_020805_110--Hb_004875_040 Hb_000306_050 Hb_000306_050 Hb_020805_110--Hb_000306_050 Hb_020805_110--Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_003171_070--Hb_006314_020 Hb_003171_070--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_003171_070--Hb_003371_040 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030 Hb_001856_150--Hb_006314_020 Hb_000230_160 Hb_000230_160 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_000081_030 Hb_000081_030 Hb_001856_150--Hb_000081_030 Hb_001856_150--Hb_004875_040 Hb_148817_010 Hb_148817_010 Hb_004875_040--Hb_148817_010 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_004875_040--Hb_006314_020 Hb_000417_350 Hb_000417_350 Hb_009711_040--Hb_000417_350 Hb_009711_040--Hb_003171_070 Hb_009711_040--Hb_000306_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.21712 0.715622 18.2061 0.100388 0.0132476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0302538 0.0476036 0.0447654 20.0201 0.498513

CAGE analysis