Hb_000676_390

Information

Type -
Description -
Location Contig676: 340305-344751
Sequence    

Annotation

kegg
ID rcu:RCOM_0172840
description hypothetical protein
nr
ID XP_012065262.1
description PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
swissprot
ID P43557
description Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1
trembl
ID A0A067LH66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06476 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53602: 340242-344724 , PASA_asmbl_53603: 344731-344982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_390 0.0 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
2 Hb_001188_030 0.0592520013 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
3 Hb_008071_020 0.0717082054 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
4 Hb_004889_020 0.0729031189 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
5 Hb_026889_030 0.0735416579 - - protein with unknown function [Ricinus communis]
6 Hb_001931_010 0.0758488528 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
7 Hb_002540_080 0.0783784718 - - cysteine-type peptidase, putative [Ricinus communis]
8 Hb_001718_030 0.0793366992 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
9 Hb_004057_010 0.0799613531 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
10 Hb_006326_040 0.0804943041 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004157_020 0.0811663385 - - PREDICTED: histone H2B-like [Gossypium raimondii]
12 Hb_026053_020 0.0825019397 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
13 Hb_001329_150 0.0841106048 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
14 Hb_002968_040 0.0861121015 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
15 Hb_018133_020 0.0880946847 - - transporter, putative [Ricinus communis]
16 Hb_001013_030 0.0891178946 - - GTP-binding protein yptv3, putative [Ricinus communis]
17 Hb_001493_050 0.0915595995 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
18 Hb_005843_140 0.0916368406 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000571_020 0.0925288068 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
20 Hb_003622_030 0.0936180714 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_390 Hb_000676_390 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_026889_030 Hb_026889_030 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_001718_030 Hb_001718_030 Hb_001188_030--Hb_001718_030 Hb_001431_080 Hb_001431_080 Hb_001188_030--Hb_001431_080 Hb_006355_040 Hb_006355_040 Hb_001188_030--Hb_006355_040 Hb_015299_030 Hb_015299_030 Hb_001188_030--Hb_015299_030 Hb_001188_030--Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_004889_020--Hb_006326_040 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_004889_020--Hb_008071_020 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001931_010--Hb_001279_080 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.1695 3.42906 12.3963 8.87763 4.06429 4.3836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.26401 19.1299 11.2806 5.06276 6.81006

CAGE analysis