Hb_000678_010

Information

Type -
Description -
Location Contig678: 49840-53462
Sequence    

Annotation

kegg
ID rcu:RCOM_1014850
description ketol-acid reductoisomerase, chloroplast precursor, putative (EC:1.1.1.86)
nr
ID XP_012091751.1
description PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q01292
description Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1
trembl
ID A0A067JNK4
description Ketol-acid reductoisomerase OS=Jatropha curcas GN=JCGZ_21555 PE=3 SV=1
Gene Ontology
ID GO:0005618
description ketol-acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53627: 49850-53385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000678_010 0.0 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
2 Hb_002913_010 0.0820677317 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
3 Hb_005903_020 0.1149890915 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
4 Hb_000229_050 0.1191483468 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
5 Hb_000926_060 0.1192843785 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011716_010 0.1282279951 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
7 Hb_000830_020 0.1323638344 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
8 Hb_000661_220 0.1363997886 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
9 Hb_000579_080 0.137073314 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
10 Hb_006775_120 0.1384816817 - - exonuclease-like protein [Oryza sativa Japonica Group]
11 Hb_133004_010 0.1389915418 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
12 Hb_002235_050 0.1391326147 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
13 Hb_000500_220 0.1406181813 - - PREDICTED: intersectin-1 [Jatropha curcas]
14 Hb_000000_330 0.1406550537 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
15 Hb_001018_060 0.1416730623 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
16 Hb_002317_010 0.1422395477 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
17 Hb_004108_210 0.1453123366 - - phenazine biosynthesis protein, putative [Ricinus communis]
18 Hb_004228_120 0.1459914627 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
19 Hb_008206_080 0.1472150598 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
20 Hb_005754_040 0.1480693861 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000678_010 Hb_000678_010 Hb_002913_010 Hb_002913_010 Hb_000678_010--Hb_002913_010 Hb_005903_020 Hb_005903_020 Hb_000678_010--Hb_005903_020 Hb_000229_050 Hb_000229_050 Hb_000678_010--Hb_000229_050 Hb_000926_060 Hb_000926_060 Hb_000678_010--Hb_000926_060 Hb_011716_010 Hb_011716_010 Hb_000678_010--Hb_011716_010 Hb_000830_020 Hb_000830_020 Hb_000678_010--Hb_000830_020 Hb_002913_010--Hb_000229_050 Hb_002235_050 Hb_002235_050 Hb_002913_010--Hb_002235_050 Hb_000296_010 Hb_000296_010 Hb_002913_010--Hb_000296_010 Hb_000742_010 Hb_000742_010 Hb_002913_010--Hb_000742_010 Hb_133004_010 Hb_133004_010 Hb_002913_010--Hb_133004_010 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_005903_020--Hb_011716_010 Hb_004108_210 Hb_004108_210 Hb_005903_020--Hb_004108_210 Hb_005903_020--Hb_000926_060 Hb_008206_080 Hb_008206_080 Hb_000229_050--Hb_008206_080 Hb_000579_080 Hb_000579_080 Hb_000229_050--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_000229_050--Hb_012633_050 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210 Hb_001279_190 Hb_001279_190 Hb_011716_010--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_011716_010--Hb_001504_010 Hb_011716_010--Hb_006438_020 Hb_004228_120 Hb_004228_120 Hb_011716_010--Hb_004228_120 Hb_000830_020--Hb_133004_010 Hb_000830_020--Hb_007483_070 Hb_000163_260 Hb_000163_260 Hb_000830_020--Hb_000163_260 Hb_000830_020--Hb_001279_190 Hb_006570_160 Hb_006570_160 Hb_000830_020--Hb_006570_160 Hb_000227_390 Hb_000227_390 Hb_000830_020--Hb_000227_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1378 28.086 155.62 73.0785 27.6859 33.1336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9616 27.2585 21.6455 105.315 39.243

CAGE analysis