Hb_000679_010

Information

Type -
Description -
Location Contig679: 28438-31364
Sequence    

Annotation

kegg
ID rcu:RCOM_0924570
description hypothetical protein
nr
ID XP_012076604.1
description PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07187 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53665: 28448-31350 , PASA_asmbl_53666: 29883-29993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_010 0.0 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
2 Hb_032202_190 0.0772562603 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
3 Hb_003092_040 0.0775333884 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
4 Hb_025645_010 0.0797071235 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
5 Hb_001902_140 0.0807071768 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
6 Hb_008511_120 0.0810113918 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
7 Hb_006615_020 0.0822975731 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
8 Hb_002016_150 0.0827565644 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
9 Hb_172426_040 0.0829594004 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
10 Hb_003057_100 0.0832553087 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
11 Hb_002830_030 0.0833813127 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
12 Hb_003050_220 0.0842044929 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
13 Hb_001983_020 0.0842100578 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_028995_040 0.0845079716 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
15 Hb_000445_420 0.0862057956 - - protein transporter, putative [Ricinus communis]
16 Hb_005618_170 0.0865493134 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_010422_060 0.0867845099 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
18 Hb_000521_320 0.0871360993 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
19 Hb_005846_040 0.0875946897 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
20 Hb_000504_140 0.0877810015 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000679_010 Hb_000679_010 Hb_032202_190 Hb_032202_190 Hb_000679_010--Hb_032202_190 Hb_003092_040 Hb_003092_040 Hb_000679_010--Hb_003092_040 Hb_025645_010 Hb_025645_010 Hb_000679_010--Hb_025645_010 Hb_001902_140 Hb_001902_140 Hb_000679_010--Hb_001902_140 Hb_008511_120 Hb_008511_120 Hb_000679_010--Hb_008511_120 Hb_006615_020 Hb_006615_020 Hb_000679_010--Hb_006615_020 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_003092_040--Hb_007691_030 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_001662_070 Hb_001662_070 Hb_025645_010--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_000787_050 Hb_000787_050 Hb_025645_010--Hb_000787_050 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_032808_010 Hb_032808_010 Hb_008511_120--Hb_032808_010 Hb_005271_220 Hb_005271_220 Hb_008511_120--Hb_005271_220 Hb_002232_410 Hb_002232_410 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000015_040 Hb_000015_040 Hb_006615_020--Hb_000015_040 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001507_040 Hb_001507_040 Hb_006615_020--Hb_001507_040 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.5774 40.0132 34.4327 35.3035 46.8443 37.0776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.2194 61.9217 68.6954 42.2664 22.0732

CAGE analysis