Hb_000679_070

Information

Type -
Description -
Location Contig679: 59952-60557
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26840g
description POPTRDRAFT_417571; hypothetical protein
nr
ID XP_002308659.2
description hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
swissprot
ID Q9ZV52
description EG45-like domain containing protein 2 OS=Arabidopsis thaliana GN=EGC2 PE=2 SV=2
trembl
ID B9HA36
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26840g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53675: 59947-60160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_070 0.0 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
2 Hb_003119_110 0.0770331507 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
3 Hb_009026_040 0.0772340008 - - pathogenesis-related family protein [Populus trichocarpa]
4 Hb_001948_040 0.0783350072 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_000712_060 0.092513909 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
6 Hb_004190_030 0.0928875704 - - unnamed protein product [Vitis vinifera]
7 Hb_000563_060 0.0933668516 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
8 Hb_002570_020 0.0995648593 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
9 Hb_000329_160 0.1007858669 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
10 Hb_002249_180 0.1025109832 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
11 Hb_000828_020 0.1031352594 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_005120_010 0.1035059459 - - amino acid transporter, putative [Ricinus communis]
13 Hb_039363_010 0.1038370877 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_001140_330 0.1042303187 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
15 Hb_000203_240 0.1061033716 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_000229_080 0.1072380677 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
17 Hb_002835_020 0.1078888455 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
18 Hb_005433_050 0.1081884254 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
19 Hb_081224_010 0.1092042607 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
20 Hb_004267_050 0.1095830468 - - hypothetical protein JCGZ_04357 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_070 Hb_000679_070 Hb_003119_110 Hb_003119_110 Hb_000679_070--Hb_003119_110 Hb_009026_040 Hb_009026_040 Hb_000679_070--Hb_009026_040 Hb_001948_040 Hb_001948_040 Hb_000679_070--Hb_001948_040 Hb_000712_060 Hb_000712_060 Hb_000679_070--Hb_000712_060 Hb_004190_030 Hb_004190_030 Hb_000679_070--Hb_004190_030 Hb_000563_060 Hb_000563_060 Hb_000679_070--Hb_000563_060 Hb_003119_110--Hb_004190_030 Hb_003119_110--Hb_000563_060 Hb_001140_330 Hb_001140_330 Hb_003119_110--Hb_001140_330 Hb_004267_050 Hb_004267_050 Hb_003119_110--Hb_004267_050 Hb_002835_020 Hb_002835_020 Hb_003119_110--Hb_002835_020 Hb_039363_010 Hb_039363_010 Hb_003119_110--Hb_039363_010 Hb_009026_040--Hb_001948_040 Hb_080238_010 Hb_080238_010 Hb_009026_040--Hb_080238_010 Hb_000828_020 Hb_000828_020 Hb_009026_040--Hb_000828_020 Hb_000221_200 Hb_000221_200 Hb_009026_040--Hb_000221_200 Hb_002249_180 Hb_002249_180 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_001948_040--Hb_000828_020 Hb_001948_040--Hb_000221_200 Hb_001948_040--Hb_000712_060 Hb_001948_040--Hb_080238_010 Hb_001948_040--Hb_002249_180 Hb_000712_060--Hb_000828_020 Hb_023732_020 Hb_023732_020 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000712_060--Hb_000221_200 Hb_003073_020 Hb_003073_020 Hb_000712_060--Hb_003073_020 Hb_004190_030--Hb_000563_060 Hb_004190_030--Hb_001140_330 Hb_004190_030--Hb_004267_050 Hb_004190_030--Hb_039363_010 Hb_010358_010 Hb_010358_010 Hb_004190_030--Hb_010358_010 Hb_000563_060--Hb_002835_020 Hb_000563_060--Hb_001140_330 Hb_000563_060--Hb_039363_010 Hb_153208_010 Hb_153208_010 Hb_000563_060--Hb_153208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.433732 0.485254 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.25153 65.6728 1.10481

CAGE analysis