Hb_000679_080

Information

Type -
Description -
Location Contig679: 60824-68700
Sequence    

Annotation

kegg
ID tcc:TCM_037021
description AFG1-like ATPase family protein
nr
ID XP_012076595.1
description PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q3V384
description Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1
trembl
ID A0A0D2QK35
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G033000 PE=4 SV=1
Gene Ontology
ID GO:0005524
description lactation elevated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53676: 60841-67858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_080 0.0 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
2 Hb_005181_120 0.0650679655 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002811_250 0.0752839945 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_010098_040 0.0826275551 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
5 Hb_003416_020 0.0936988104 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
6 Hb_000516_080 0.0984187254 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
7 Hb_007982_040 0.0984384118 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
8 Hb_000045_050 0.0995192854 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
9 Hb_002662_110 0.1027527663 - - Kinesin heavy chain, putative [Ricinus communis]
10 Hb_000108_150 0.1027708374 - - alpha/beta hydrolase, putative [Ricinus communis]
11 Hb_172426_060 0.103771401 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
12 Hb_001365_030 0.1053880323 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
13 Hb_000061_250 0.1062482406 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
14 Hb_007765_130 0.1089847113 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
15 Hb_009393_130 0.1092593783 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
16 Hb_005488_190 0.109305562 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_010721_020 0.1112441712 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
18 Hb_005977_060 0.1121007284 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032631_030 0.1133399482 - - phosphatidic acid phosphatase, putative [Ricinus communis]
20 Hb_000684_200 0.1141299611 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000679_080 Hb_000679_080 Hb_005181_120 Hb_005181_120 Hb_000679_080--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_000679_080--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000679_080--Hb_010098_040 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040 Hb_005181_120--Hb_010098_040 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_002811_250--Hb_010098_040 Hb_010098_040--Hb_000516_080 Hb_010098_040--Hb_007982_040 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_002662_110 Hb_002662_110 Hb_003416_020--Hb_002662_110 Hb_126933_020 Hb_126933_020 Hb_003416_020--Hb_126933_020 Hb_093077_010 Hb_093077_010 Hb_003416_020--Hb_093077_010 Hb_000283_030 Hb_000283_030 Hb_003416_020--Hb_000283_030 Hb_007765_130 Hb_007765_130 Hb_003416_020--Hb_007765_130 Hb_000516_080--Hb_007982_040 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_000516_080--Hb_002811_250 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_007982_040--Hb_000193_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60284 6.19114 25.853 15.1679 1.38226 2.54716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02301 1.16636 1.46681 4.12132 36.1085

CAGE analysis