Hb_000679_090

Information

Type -
Description -
Location Contig679: 69038-70876
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26860g
description POPTRDRAFT_802442; hypothetical protein
nr
ID XP_012076594.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
swissprot
ID A8MQA3
description Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
trembl
ID A0A067KBT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53677: 69863-69974 , PASA_asmbl_53678: 70084-70578 , PASA_asmbl_53679: 70694-71034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
2 Hb_000696_150 0.0723437996 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
3 Hb_007426_180 0.0833517718 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
4 Hb_004994_140 0.0909077079 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
5 Hb_003376_350 0.0965955235 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
6 Hb_012107_060 0.0985329736 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
7 Hb_000117_090 0.0995788812 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
8 Hb_000915_090 0.101739201 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
9 Hb_000039_160 0.1025397966 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
10 Hb_004586_340 0.1032151264 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
11 Hb_015279_010 0.1055295712 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_001245_100 0.1062201809 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
13 Hb_008725_260 0.1075874413 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
14 Hb_003125_200 0.1079797449 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
15 Hb_000866_220 0.1080274484 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
16 Hb_001157_040 0.1082069326 - - casein kinase, putative [Ricinus communis]
17 Hb_005551_050 0.1092388001 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
18 Hb_027380_050 0.1103155995 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
19 Hb_000856_380 0.1108054784 - - ubiquitin-conjugating enzyme [Medicago truncatula]
20 Hb_000189_560 0.1108462724 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_090 Hb_000679_090 Hb_000696_150 Hb_000696_150 Hb_000679_090--Hb_000696_150 Hb_007426_180 Hb_007426_180 Hb_000679_090--Hb_007426_180 Hb_004994_140 Hb_004994_140 Hb_000679_090--Hb_004994_140 Hb_003376_350 Hb_003376_350 Hb_000679_090--Hb_003376_350 Hb_012107_060 Hb_012107_060 Hb_000679_090--Hb_012107_060 Hb_000117_090 Hb_000117_090 Hb_000679_090--Hb_000117_090 Hb_000866_220 Hb_000866_220 Hb_000696_150--Hb_000866_220 Hb_004586_340 Hb_004586_340 Hb_000696_150--Hb_004586_340 Hb_000056_210 Hb_000056_210 Hb_000696_150--Hb_000056_210 Hb_005015_070 Hb_005015_070 Hb_000696_150--Hb_005015_070 Hb_001157_040 Hb_001157_040 Hb_000696_150--Hb_001157_040 Hb_005551_050 Hb_005551_050 Hb_007426_180--Hb_005551_050 Hb_001552_020 Hb_001552_020 Hb_007426_180--Hb_001552_020 Hb_000500_100 Hb_000500_100 Hb_007426_180--Hb_000500_100 Hb_002256_030 Hb_002256_030 Hb_007426_180--Hb_002256_030 Hb_007426_180--Hb_003376_350 Hb_000069_420 Hb_000069_420 Hb_004994_140--Hb_000069_420 Hb_007416_320 Hb_007416_320 Hb_004994_140--Hb_007416_320 Hb_004994_140--Hb_012107_060 Hb_004994_140--Hb_003376_350 Hb_005846_040 Hb_005846_040 Hb_004994_140--Hb_005846_040 Hb_000062_220 Hb_000062_220 Hb_004994_140--Hb_000062_220 Hb_004907_110 Hb_004907_110 Hb_003376_350--Hb_004907_110 Hb_002631_060 Hb_002631_060 Hb_003376_350--Hb_002631_060 Hb_000926_330 Hb_000926_330 Hb_003376_350--Hb_000926_330 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_007532_030 Hb_007532_030 Hb_003376_350--Hb_007532_030 Hb_004324_090 Hb_004324_090 Hb_012107_060--Hb_004324_090 Hb_012107_060--Hb_000069_420 Hb_158445_010 Hb_158445_010 Hb_012107_060--Hb_158445_010 Hb_002878_020 Hb_002878_020 Hb_012107_060--Hb_002878_020 Hb_000250_060 Hb_000250_060 Hb_012107_060--Hb_000250_060 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000117_090--Hb_008566_050 Hb_000366_090 Hb_000366_090 Hb_000117_090--Hb_000366_090 Hb_168319_030 Hb_168319_030 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.856329 1.29976 0.681139 0.426751 0.639216 0.715116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05615 1.96191 1.43394 0.598423 0.387152

CAGE analysis