Hb_000679_120

Information

Type -
Description -
Location Contig679: 89392-91472
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01610g
description POPTRDRAFT_911685; hypothetical protein
nr
ID XP_002324855.2
description hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
swissprot
ID Q9LW07
description Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1
trembl
ID B9IKW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01610g PE=3 SV=2
Gene Ontology
ID GO:0016798
description probable polygalacturonase at3g15720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_120 0.0 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
2 Hb_005725_200 0.2289432006 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
3 Hb_003897_020 0.2475219428 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
4 Hb_000321_080 0.2523515979 - - histone H4 [Zea mays]
5 Hb_002641_040 0.2536865848 - - class III peroxidase [Populus trichocarpa]
6 Hb_001431_110 0.2644623707 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
7 Hb_002067_010 0.2737640718 - - conserved hypothetical protein [Ricinus communis]
8 Hb_032208_020 0.2768015255 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
9 Hb_005162_130 0.2796121521 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
10 Hb_044662_050 0.2796800572 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
11 Hb_004545_020 0.2838300301 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
12 Hb_000345_410 0.2893032587 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
13 Hb_001300_210 0.2966688806 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
14 Hb_001946_350 0.2981722411 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
15 Hb_004449_140 0.2988678729 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
16 Hb_004453_100 0.2989741698 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002007_280 0.3020383258 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
18 Hb_003861_030 0.3033137572 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
19 Hb_010998_050 0.3058840284 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
20 Hb_001507_080 0.306472787 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_120 Hb_000679_120 Hb_005725_200 Hb_005725_200 Hb_000679_120--Hb_005725_200 Hb_003897_020 Hb_003897_020 Hb_000679_120--Hb_003897_020 Hb_000321_080 Hb_000321_080 Hb_000679_120--Hb_000321_080 Hb_002641_040 Hb_002641_040 Hb_000679_120--Hb_002641_040 Hb_001431_110 Hb_001431_110 Hb_000679_120--Hb_001431_110 Hb_002067_010 Hb_002067_010 Hb_000679_120--Hb_002067_010 Hb_000088_220 Hb_000088_220 Hb_005725_200--Hb_000088_220 Hb_005725_200--Hb_000321_080 Hb_001946_350 Hb_001946_350 Hb_005725_200--Hb_001946_350 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050 Hb_002157_200 Hb_002157_200 Hb_003897_020--Hb_002157_200 Hb_086922_010 Hb_086922_010 Hb_003897_020--Hb_086922_010 Hb_007632_150 Hb_007632_150 Hb_003897_020--Hb_007632_150 Hb_003897_020--Hb_005725_200 Hb_135811_030 Hb_135811_030 Hb_003897_020--Hb_135811_030 Hb_000345_410 Hb_000345_410 Hb_000321_080--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000321_080--Hb_002007_280 Hb_000321_080--Hb_044662_050 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_002007_040 Hb_002007_040 Hb_000321_080--Hb_002007_040 Hb_008406_100 Hb_008406_100 Hb_000321_080--Hb_008406_100 Hb_002641_040--Hb_044662_050 Hb_000264_120 Hb_000264_120 Hb_002641_040--Hb_000264_120 Hb_007002_050 Hb_007002_050 Hb_002641_040--Hb_007002_050 Hb_002641_040--Hb_000321_080 Hb_002641_040--Hb_002007_040 Hb_003078_060 Hb_003078_060 Hb_001431_110--Hb_003078_060 Hb_003750_070 Hb_003750_070 Hb_001431_110--Hb_003750_070 Hb_005489_030 Hb_005489_030 Hb_001431_110--Hb_005489_030 Hb_001431_110--Hb_000321_080 Hb_004545_020 Hb_004545_020 Hb_001431_110--Hb_004545_020 Hb_001507_080 Hb_001507_080 Hb_002067_010--Hb_001507_080 Hb_074792_010 Hb_074792_010 Hb_002067_010--Hb_074792_010 Hb_003430_040 Hb_003430_040 Hb_002067_010--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_002067_010--Hb_003874_010 Hb_004342_020 Hb_004342_020 Hb_002067_010--Hb_004342_020 Hb_010080_010 Hb_010080_010 Hb_002067_010--Hb_010080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.325331 0 1.1842 0.127462 0.0184089 0.145393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419508 0.131994 0.122593 0.0264516 0

CAGE analysis