Hb_000679_150

Information

Type -
Description -
Location Contig679: 115092-118366
Sequence    

Annotation

kegg
ID mus:103978776
description DEAD-box ATP-dependent RNA helicase 56-like isoform X1
nr
ID XP_011459188.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
swissprot
ID Q9LFN6
description DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=1 SV=2
trembl
ID A0A0D2VIF8
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G215200 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 56-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53689: 95526-118366 , PASA_asmbl_53690: 95526-118366 , PASA_asmbl_53691: 95526-118325 , PASA_asmbl_53692: 95526-115952
cDNA
(Sanger)
(ID:Location)		 035_C14.ab1: 116489-118366

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_150 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
2 Hb_005883_050 0.0883936547 - - PREDICTED: transportin-3 [Jatropha curcas]
3 Hb_007380_090 0.0897203168 - - -
4 Hb_003363_010 0.0899308135 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006663_070 0.0904181847 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
6 Hb_001691_120 0.0942811109 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
7 Hb_144598_030 0.0971833047 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
8 Hb_000436_040 0.0986075992 - - PREDICTED: transportin-1 [Jatropha curcas]
9 Hb_007192_080 0.0988985219 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
10 Hb_004619_050 0.0994238161 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
11 Hb_000025_110 0.0997918797 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
12 Hb_000606_080 0.1022095343 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
13 Hb_005608_030 0.1022684206 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
14 Hb_000364_060 0.1027713903 - - JHL03K20.4 [Jatropha curcas]
15 Hb_032458_010 0.1033104764 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
16 Hb_009535_020 0.1045290438 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
17 Hb_020719_030 0.1046044951 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
18 Hb_004102_140 0.1046716147 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002067_120 0.1050414588 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
20 Hb_001488_410 0.1064194182 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]

Gene co-expression network

sample Hb_000679_150 Hb_000679_150 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_003363_010 Hb_003363_010 Hb_000679_150--Hb_003363_010 Hb_006663_070 Hb_006663_070 Hb_000679_150--Hb_006663_070 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_071736_010 Hb_071736_010 Hb_005883_050--Hb_071736_010 Hb_000120_500 Hb_000120_500 Hb_005883_050--Hb_000120_500 Hb_003434_060 Hb_003434_060 Hb_005883_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_005883_050--Hb_000390_060 Hb_005754_060 Hb_005754_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_000436_040 Hb_000436_040 Hb_007380_090--Hb_000436_040 Hb_002600_140 Hb_002600_140 Hb_007380_090--Hb_002600_140 Hb_000364_060 Hb_000364_060 Hb_007380_090--Hb_000364_060 Hb_007380_090--Hb_003363_010 Hb_001102_150 Hb_001102_150 Hb_007380_090--Hb_001102_150 Hb_001863_110 Hb_001863_110 Hb_003363_010--Hb_001863_110 Hb_003363_010--Hb_003434_060 Hb_001609_010 Hb_001609_010 Hb_003363_010--Hb_001609_010 Hb_000316_030 Hb_000316_030 Hb_003363_010--Hb_000316_030 Hb_002174_060 Hb_002174_060 Hb_003363_010--Hb_002174_060 Hb_002601_130 Hb_002601_130 Hb_006663_070--Hb_002601_130 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_005054_100 Hb_005054_100 Hb_001691_120--Hb_005054_100 Hb_001691_120--Hb_005679_050 Hb_000169_090 Hb_000169_090 Hb_001691_120--Hb_000169_090 Hb_002811_060 Hb_002811_060 Hb_001691_120--Hb_002811_060 Hb_009535_020 Hb_009535_020 Hb_001691_120--Hb_009535_020 Hb_028639_010 Hb_028639_010 Hb_001691_120--Hb_028639_010 Hb_020665_040 Hb_020665_040 Hb_144598_030--Hb_020665_040 Hb_007594_130 Hb_007594_130 Hb_144598_030--Hb_007594_130 Hb_002671_100 Hb_002671_100 Hb_144598_030--Hb_002671_100 Hb_004117_130 Hb_004117_130 Hb_144598_030--Hb_004117_130 Hb_004881_020 Hb_004881_020 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3422 10.2626 11.3913 22.8521 28.9678 66.9772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2709 16.0347 22.7604 16.8727 17.7237

CAGE analysis