Hb_000679_180

Information

Type transcription factor
Description TF Family: ERF
Location Contig679: 124211-127045
Sequence    

Annotation

kegg
ID rcu:RCOM_0924050
description DNA binding protein, putative
nr
ID XP_002515519.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q3E958
description Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1
trembl
ID B9RP50
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0924050 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor shine 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_180 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_006663_120 0.0002971701 - - ATP binding protein, putative [Ricinus communis]
3 Hb_007227_020 0.0004192406 - - -
4 Hb_001002_010 0.0015015363 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002217_010 0.0064237054 - - Peroxiredoxin, putative [Ricinus communis]
6 Hb_000471_130 0.0073179598 - - conserved hypothetical protein [Ricinus communis]
7 Hb_090521_010 0.0097962606 - - Major allergen Pru ar, putative [Ricinus communis]
8 Hb_002007_030 0.0113916832 - - conserved hypothetical protein [Ricinus communis]
9 Hb_036116_010 0.0115068334 - - JHL22C18.10 [Jatropha curcas]
10 Hb_102179_020 0.012803593 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_000397_180 0.0141533597 - - -
12 Hb_002157_110 0.0168719692 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
13 Hb_004899_240 0.0199407497 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000813_110 0.0220435776 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
15 Hb_005333_090 0.0232345277 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
16 Hb_003038_020 0.0239924601 - - unnamed protein product [Coffea canephora]
17 Hb_003687_060 0.0247184451 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000803_280 0.0277639815 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
19 Hb_005356_020 0.0284234465 - - glutaredoxin, grx, putative [Ricinus communis]
20 Hb_001491_080 0.028610872 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000679_180 Hb_000679_180 Hb_006663_120 Hb_006663_120 Hb_000679_180--Hb_006663_120 Hb_007227_020 Hb_007227_020 Hb_000679_180--Hb_007227_020 Hb_001002_010 Hb_001002_010 Hb_000679_180--Hb_001002_010 Hb_002217_010 Hb_002217_010 Hb_000679_180--Hb_002217_010 Hb_000471_130 Hb_000471_130 Hb_000679_180--Hb_000471_130 Hb_090521_010 Hb_090521_010 Hb_000679_180--Hb_090521_010 Hb_006663_120--Hb_007227_020 Hb_006663_120--Hb_001002_010 Hb_006663_120--Hb_002217_010 Hb_006663_120--Hb_000471_130 Hb_006663_120--Hb_090521_010 Hb_007227_020--Hb_001002_010 Hb_007227_020--Hb_002217_010 Hb_007227_020--Hb_000471_130 Hb_007227_020--Hb_090521_010 Hb_001002_010--Hb_002217_010 Hb_001002_010--Hb_000471_130 Hb_001002_010--Hb_090521_010 Hb_002217_010--Hb_000471_130 Hb_002217_010--Hb_090521_010 Hb_036116_010 Hb_036116_010 Hb_002217_010--Hb_036116_010 Hb_000471_130--Hb_090521_010 Hb_000471_130--Hb_036116_010 Hb_090521_010--Hb_036116_010 Hb_002157_110 Hb_002157_110 Hb_090521_010--Hb_002157_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.668992 4.02593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis