Hb_000679_210

Information

Type -
Description -
Location Contig679: 142343-144301
Sequence    

Annotation

kegg
ID rcu:RCOM_0924020
description grr1, plant, putative
nr
ID XP_002515516.1
description grr1, plant, putative [Ricinus communis]
swissprot
ID Q9SKK0
description EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1
trembl
ID B9RP47
description Grr1, plant, putative OS=Ricinus communis GN=RCOM_0924020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53700: 140702-145087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_210 0.0 - - grr1, plant, putative [Ricinus communis]
2 Hb_000571_160 0.1013250442 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
3 Hb_000512_030 0.10505812 - - wall-associated kinase, putative [Ricinus communis]
4 Hb_011861_080 0.1187030516 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
5 Hb_002631_200 0.1294874204 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
6 Hb_134279_010 0.1299780251 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
7 Hb_000789_240 0.136429084 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
8 Hb_002027_190 0.1366632341 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
9 Hb_014497_020 0.1399563407 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
10 Hb_000107_560 0.1404436527 - - glutamate receptor 3 plant, putative [Ricinus communis]
11 Hb_003895_040 0.1409230553 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
12 Hb_185830_070 0.1411812351 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
13 Hb_000866_370 0.1412519445 - - synaptotagmin, putative [Ricinus communis]
14 Hb_000170_100 0.1415255178 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
15 Hb_006907_140 0.141703709 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011310_200 0.1420168867 - - grr1, plant, putative [Ricinus communis]
17 Hb_000049_150 0.142596147 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_000574_530 0.14263166 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
19 Hb_000175_120 0.1432792045 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
20 Hb_000105_030 0.1435480352 - - fkbp-rapamycin associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000679_210 Hb_000679_210 Hb_000571_160 Hb_000571_160 Hb_000679_210--Hb_000571_160 Hb_000512_030 Hb_000512_030 Hb_000679_210--Hb_000512_030 Hb_011861_080 Hb_011861_080 Hb_000679_210--Hb_011861_080 Hb_002631_200 Hb_002631_200 Hb_000679_210--Hb_002631_200 Hb_134279_010 Hb_134279_010 Hb_000679_210--Hb_134279_010 Hb_000789_240 Hb_000789_240 Hb_000679_210--Hb_000789_240 Hb_000049_150 Hb_000049_150 Hb_000571_160--Hb_000049_150 Hb_004109_380 Hb_004109_380 Hb_000571_160--Hb_004109_380 Hb_010809_010 Hb_010809_010 Hb_000571_160--Hb_010809_010 Hb_006907_140 Hb_006907_140 Hb_000571_160--Hb_006907_140 Hb_007576_210 Hb_007576_210 Hb_000571_160--Hb_007576_210 Hb_011828_030 Hb_011828_030 Hb_000571_160--Hb_011828_030 Hb_003895_040 Hb_003895_040 Hb_000512_030--Hb_003895_040 Hb_002027_190 Hb_002027_190 Hb_000512_030--Hb_002027_190 Hb_000512_030--Hb_000571_160 Hb_014497_020 Hb_014497_020 Hb_000512_030--Hb_014497_020 Hb_000631_110 Hb_000631_110 Hb_000512_030--Hb_000631_110 Hb_001414_040 Hb_001414_040 Hb_011861_080--Hb_001414_040 Hb_011861_080--Hb_000571_160 Hb_011861_080--Hb_002631_200 Hb_011861_080--Hb_006907_140 Hb_011861_080--Hb_000049_150 Hb_011287_050 Hb_011287_050 Hb_011861_080--Hb_011287_050 Hb_000083_270 Hb_000083_270 Hb_002631_200--Hb_000083_270 Hb_002153_030 Hb_002153_030 Hb_002631_200--Hb_002153_030 Hb_000009_120 Hb_000009_120 Hb_002631_200--Hb_000009_120 Hb_002631_200--Hb_000571_160 Hb_185830_070 Hb_185830_070 Hb_002631_200--Hb_185830_070 Hb_134279_010--Hb_003895_040 Hb_015183_080 Hb_015183_080 Hb_134279_010--Hb_015183_080 Hb_134279_010--Hb_014497_020 Hb_134279_010--Hb_000512_030 Hb_003604_030 Hb_003604_030 Hb_134279_010--Hb_003604_030 Hb_000022_180 Hb_000022_180 Hb_000789_240--Hb_000022_180 Hb_000175_120 Hb_000175_120 Hb_000789_240--Hb_000175_120 Hb_012565_080 Hb_012565_080 Hb_000789_240--Hb_012565_080 Hb_000789_240--Hb_004109_380 Hb_000789_240--Hb_000571_160 Hb_000789_240--Hb_011828_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98439 44.1689 5.37037 21.8507 13.8515 12.4718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14072 3.25252 13.5684 33.4554 19.9561

CAGE analysis