Hb_000679_310

Information

Type -
Description -
Location Contig679: 211504-216601
Sequence    

Annotation

kegg
ID cit:102625745
description putative UDP-sugar transporter DDB_G0278631-like
nr
ID XP_012076539.1
description PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
swissprot
ID Q15B89
description UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment) OS=Sus scrofa GN=SLC35D2 PE=2 SV=1
trembl
ID A0A067KEZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07154 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleotide sugar transporter family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53716: 211763-213017 , PASA_asmbl_53717: 213301-216507 , PASA_asmbl_53718: 213594-213712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_310 0.0 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
2 Hb_000289_040 0.0558972735 - - Poly(A) polymerase alpha, putative [Ricinus communis]
3 Hb_000076_160 0.0569535049 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
4 Hb_011609_140 0.0618472633 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
5 Hb_000696_230 0.0642412438 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
6 Hb_028962_020 0.0642538115 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
7 Hb_002876_130 0.0644401865 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
8 Hb_001408_040 0.0659517632 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
9 Hb_000484_030 0.0671454338 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
10 Hb_008103_060 0.0687789369 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
11 Hb_014361_070 0.069820284 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
12 Hb_002028_210 0.0700337907 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
13 Hb_001751_140 0.0714924888 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
14 Hb_001205_200 0.0726014645 - - conserved hypothetical protein [Ricinus communis]
15 Hb_140049_040 0.0727201656 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
16 Hb_003866_080 0.0741148222 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
17 Hb_000070_080 0.0741258531 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
18 Hb_005653_090 0.0744438973 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
19 Hb_000928_220 0.0751612083 - - PREDICTED: protein SCAI [Jatropha curcas]
20 Hb_000309_040 0.0755965478 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_310 Hb_000679_310 Hb_000289_040 Hb_000289_040 Hb_000679_310--Hb_000289_040 Hb_000076_160 Hb_000076_160 Hb_000679_310--Hb_000076_160 Hb_011609_140 Hb_011609_140 Hb_000679_310--Hb_011609_140 Hb_000696_230 Hb_000696_230 Hb_000679_310--Hb_000696_230 Hb_028962_020 Hb_028962_020 Hb_000679_310--Hb_028962_020 Hb_002876_130 Hb_002876_130 Hb_000679_310--Hb_002876_130 Hb_000289_040--Hb_002876_130 Hb_140049_040 Hb_140049_040 Hb_000289_040--Hb_140049_040 Hb_014361_070 Hb_014361_070 Hb_000289_040--Hb_014361_070 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000484_030 Hb_000484_030 Hb_011609_140--Hb_000484_030 Hb_001922_150 Hb_001922_150 Hb_011609_140--Hb_001922_150 Hb_001635_160 Hb_001635_160 Hb_011609_140--Hb_001635_160 Hb_011609_140--Hb_001751_140 Hb_003680_150 Hb_003680_150 Hb_011609_140--Hb_003680_150 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090 Hb_002028_210 Hb_002028_210 Hb_028962_020--Hb_002028_210 Hb_028962_020--Hb_001408_040 Hb_002205_110 Hb_002205_110 Hb_028962_020--Hb_002205_110 Hb_005653_090 Hb_005653_090 Hb_028962_020--Hb_005653_090 Hb_000886_050 Hb_000886_050 Hb_028962_020--Hb_000886_050 Hb_002876_130--Hb_000928_220 Hb_002876_130--Hb_140049_040 Hb_002078_110 Hb_002078_110 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_002876_130--Hb_000076_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03223 6.70945 4.30364 5.18879 5.19555 5.61129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81636 5.11055 3.08316 4.9655 3.35134

CAGE analysis