Hb_000679_320

Information

Type -
Description -
Location Contig679: 217507-222092
Sequence    

Annotation

kegg
ID pxb:103946809
description uncharacterized LOC103946809
nr
ID XP_011039676.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
swissprot
ID P31853
description ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2
trembl
ID A0A061GHV4
description ATP synthase subunit b' isoform 1 OS=Theobroma cacao GN=TCM_036983 PE=4 SV=1
Gene Ontology
ID GO:0009579
description atp synthase subunit b isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53720: 218486-220899 , PASA_asmbl_53721: 221333-222380
cDNA
(Sanger)
(ID:Location)		 014_A18.ab1: 221388-221701 , 015_C15.ab1: 221333-221496 , 019_K24.ab1: 221428-222118 , 023_N12.ab1: 221389-221753 , 043_A19.ab1: 221403-222116

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_320 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
2 Hb_004979_050 0.0789700451 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
3 Hb_009393_140 0.0820235702 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
4 Hb_006472_040 0.091922523 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
5 Hb_000359_160 0.0921064417 - - PREDICTED: protein CAJ1 [Jatropha curcas]
6 Hb_000107_540 0.0954862988 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
7 Hb_008112_020 0.0967888424 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
8 Hb_001517_010 0.0980380738 - - conserved hypothetical protein [Ricinus communis]
9 Hb_163950_040 0.0985185121 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
10 Hb_002814_010 0.0992894973 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
11 Hb_001691_180 0.1018766473 - - phosphoglycerate mutase, putative [Ricinus communis]
12 Hb_006915_010 0.103647521 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_001541_280 0.1072076311 - - phosphate transporter [Manihot esculenta]
14 Hb_001195_290 0.1145690051 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
15 Hb_010080_070 0.1168671744 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
16 Hb_156850_020 0.118318143 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
17 Hb_000252_180 0.1189296237 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
18 Hb_022693_020 0.1191891231 - - pectin acetylesterase, putative [Ricinus communis]
19 Hb_028960_010 0.1203443007 - - phosphoglycerate kinase, putative [Ricinus communis]
20 Hb_002333_040 0.1217438256 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]

Gene co-expression network

sample Hb_000679_320 Hb_000679_320 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_004979_050--Hb_000359_160 Hb_004979_050--Hb_008112_020 Hb_001266_160 Hb_001266_160 Hb_004979_050--Hb_001266_160 Hb_001517_010 Hb_001517_010 Hb_004979_050--Hb_001517_010 Hb_004979_050--Hb_006472_040 Hb_000252_180 Hb_000252_180 Hb_009393_140--Hb_000252_180 Hb_009393_140--Hb_006472_040 Hb_009393_140--Hb_000359_160 Hb_009393_140--Hb_004979_050 Hb_022693_020 Hb_022693_020 Hb_009393_140--Hb_022693_020 Hb_006472_040--Hb_008112_020 Hb_001195_290 Hb_001195_290 Hb_006472_040--Hb_001195_290 Hb_169383_010 Hb_169383_010 Hb_006472_040--Hb_169383_010 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_000107_540--Hb_001517_010 Hb_002333_040 Hb_002333_040 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_004162_250 Hb_004162_250 Hb_000107_540--Hb_004162_250 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_008112_020--Hb_169383_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.678877 9.70335 40.2416 39.0763 0.927546 1.05566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88315 2.23343 1.58927 7.15628 155.226

CAGE analysis