Hb_000679_330

Information

Type -
Description -
Location Contig679: 225174-227822
Sequence    

Annotation

kegg
ID rcu:RCOM_0923740
description protein kinase, putative
nr
ID XP_012076533.1
description PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
swissprot
ID Q9FY48
description E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2
trembl
ID A0A067KMR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07151 PE=4 SV=1
Gene Ontology
ID GO:0009507
description e3 ubiquitin-protein ligase keg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53722: 225359-227426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_330 0.0 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
2 Hb_188063_010 0.0702261049 - - hypothetical protein RCOM_1469330 [Ricinus communis]
3 Hb_002000_070 0.0801241758 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
4 Hb_000025_710 0.0805002436 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
5 Hb_002333_050 0.0862653799 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
6 Hb_000398_020 0.0887467578 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
7 Hb_001959_020 0.0898579057 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
8 Hb_003581_170 0.091376549 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
9 Hb_001699_280 0.0925451393 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
10 Hb_002400_140 0.0936289836 - - protein kinase, putative [Ricinus communis]
11 Hb_000105_040 0.0946557733 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
12 Hb_005542_140 0.0970289109 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
13 Hb_004327_040 0.0970800001 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
14 Hb_000069_410 0.097525548 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
15 Hb_001617_040 0.0983935403 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_005832_010 0.1002536622 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
17 Hb_029977_040 0.1002624676 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
18 Hb_001377_160 0.1008454074 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
19 Hb_001935_140 0.1022289918 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
20 Hb_002217_430 0.1028916368 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_330 Hb_000679_330 Hb_188063_010 Hb_188063_010 Hb_000679_330--Hb_188063_010 Hb_002000_070 Hb_002000_070 Hb_000679_330--Hb_002000_070 Hb_000025_710 Hb_000025_710 Hb_000679_330--Hb_000025_710 Hb_002333_050 Hb_002333_050 Hb_000679_330--Hb_002333_050 Hb_000398_020 Hb_000398_020 Hb_000679_330--Hb_000398_020 Hb_001959_020 Hb_001959_020 Hb_000679_330--Hb_001959_020 Hb_188063_010--Hb_002333_050 Hb_188063_010--Hb_000025_710 Hb_001699_280 Hb_001699_280 Hb_188063_010--Hb_001699_280 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150 Hb_029977_040 Hb_029977_040 Hb_002000_070--Hb_029977_040 Hb_001617_040 Hb_001617_040 Hb_002000_070--Hb_001617_040 Hb_002000_070--Hb_000398_020 Hb_002000_070--Hb_000025_710 Hb_000003_190 Hb_000003_190 Hb_002000_070--Hb_000003_190 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_002333_050--Hb_009486_170 Hb_002909_120 Hb_002909_120 Hb_002333_050--Hb_002909_120 Hb_002333_050--Hb_001699_280 Hb_000665_230 Hb_000665_230 Hb_002333_050--Hb_000665_230 Hb_000648_080 Hb_000648_080 Hb_000398_020--Hb_000648_080 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000406_230 Hb_000406_230 Hb_000398_020--Hb_000406_230 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_001959_020--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_001959_020--Hb_000949_010 Hb_001959_020--Hb_003581_170 Hb_000661_200 Hb_000661_200 Hb_001959_020--Hb_000661_200 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410 Hb_128743_010 Hb_128743_010 Hb_001959_020--Hb_128743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.16038 15.8914 4.86463 7.39107 10.0735 8.67939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44743 4.61269 3.06325 11.974 11.5835

CAGE analysis