Hb_000679_340

Information

Type -
Description -
Location Contig679: 228085-254014
Sequence    

Annotation

kegg
ID rcu:RCOM_0557140
description hypothetical protein
nr
ID XP_012092341.1
description PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22010 PE=4 SV=1
Gene Ontology
ID GO:0005634
description PREDICTED: uncharacterized protein LOC105650070 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53723: 228237-235560 , PASA_asmbl_53724: 231799-232029 , PASA_asmbl_53725: 233539-234091 , PASA_asmbl_53726: 235644-253566 , PASA_asmbl_53727: 253680-255822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_340 0.0 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
2 Hb_022256_060 0.0490797507 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
3 Hb_000230_090 0.0497466638 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
4 Hb_005965_030 0.0644238238 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
5 Hb_003633_070 0.0644954762 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
6 Hb_008887_020 0.0653110346 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
7 Hb_000922_020 0.0673996818 - - protein binding protein, putative [Ricinus communis]
8 Hb_003638_090 0.0682387615 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
9 Hb_001636_050 0.0688518122 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
10 Hb_000960_050 0.0696431521 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
11 Hb_002701_150 0.0700298638 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
12 Hb_008568_020 0.0708704154 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
13 Hb_000160_350 0.0720699751 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
14 Hb_032264_060 0.0735487767 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
15 Hb_001140_030 0.0738033457 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
16 Hb_001405_190 0.0739542165 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
17 Hb_008695_110 0.0739956413 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
18 Hb_143766_110 0.0746467474 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
19 Hb_000525_100 0.0750739895 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
20 Hb_000640_310 0.0769173297 - - hypothetical protein JCGZ_14055 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_340 Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_022256_060--Hb_008887_020 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_000230_090--Hb_008695_110 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_005965_030--Hb_022256_060 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_027760_080 Hb_027760_080 Hb_008887_020--Hb_027760_080 Hb_005332_020 Hb_005332_020 Hb_008887_020--Hb_005332_020 Hb_008887_020--Hb_000914_120 Hb_008887_020--Hb_000230_090 Hb_001405_190 Hb_001405_190 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000922_020--Hb_022256_060 Hb_032202_080 Hb_032202_080 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0192 15.2711 14.6738 7.09435 14.5032 14.2694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02036 7.27562 5.13006 7.57452 8.64884

CAGE analysis