Hb_000680_010

Information

Type -
Description -
Location Contig680: 2609-8077
Sequence    

Annotation

kegg
ID rcu:RCOM_0311410
description catalytic, putative
nr
ID XP_011000811.1
description PREDICTED: putative hydrolase C777.06c [Populus euphratica]
swissprot
ID O74545
description Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1
trembl
ID A0A067L8F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24759 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53734: 2743-2959 , PASA_asmbl_53735: 3678-8153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_010 0.0 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
2 Hb_003883_010 0.0635238016 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
3 Hb_160271_010 0.0853234716 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
4 Hb_000291_180 0.0867174126 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
5 Hb_002915_010 0.0879524078 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
6 Hb_002107_050 0.0911019524 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
7 Hb_000320_190 0.0952143306 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_000016_310 0.0952360721 - - protein binding protein, putative [Ricinus communis]
9 Hb_012779_080 0.0968971837 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
10 Hb_005235_070 0.105106644 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
11 Hb_022693_130 0.1053033924 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_009288_040 0.1073862881 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
13 Hb_005665_090 0.1076843913 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
14 Hb_010620_050 0.108162274 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
15 Hb_000003_680 0.1083179868 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
16 Hb_001430_020 0.1086836347 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
17 Hb_005000_080 0.1087630304 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
18 Hb_000318_220 0.1094434631 - - conserved hypothetical protein [Ricinus communis]
19 Hb_021596_020 0.1112888481 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
20 Hb_002150_140 0.1119614789 - - PREDICTED: girdin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000680_010 Hb_000680_010 Hb_003883_010 Hb_003883_010 Hb_000680_010--Hb_003883_010 Hb_160271_010 Hb_160271_010 Hb_000680_010--Hb_160271_010 Hb_000291_180 Hb_000291_180 Hb_000680_010--Hb_000291_180 Hb_002915_010 Hb_002915_010 Hb_000680_010--Hb_002915_010 Hb_002107_050 Hb_002107_050 Hb_000680_010--Hb_002107_050 Hb_000320_190 Hb_000320_190 Hb_000680_010--Hb_000320_190 Hb_003883_010--Hb_002107_050 Hb_003883_010--Hb_002915_010 Hb_005235_070 Hb_005235_070 Hb_003883_010--Hb_005235_070 Hb_002218_020 Hb_002218_020 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_160271_010--Hb_000291_180 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_160271_010--Hb_002107_050 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_001882_010 Hb_001882_010 Hb_000291_180--Hb_001882_010 Hb_048093_010 Hb_048093_010 Hb_000291_180--Hb_048093_010 Hb_000291_180--Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_000291_180--Hb_068079_010 Hb_012779_080 Hb_012779_080 Hb_002915_010--Hb_012779_080 Hb_002915_010--Hb_000320_190 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_000320_190--Hb_012779_080 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000645_180 Hb_000645_180 Hb_000320_190--Hb_000645_180 Hb_005665_090 Hb_005665_090 Hb_000320_190--Hb_005665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75823 3.0425 6.76384 4.93898 0.978231 1.76083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59462 2.37474 1.47753 1.50076 7.0059

CAGE analysis