Hb_000680_050

Information

Type -
Description -
Location Contig680: 27242-33003
Sequence    

Annotation

kegg
ID rcu:RCOM_0311760
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP40768.1
description hypothetical protein JCGZ_24767 [Jatropha curcas]
swissprot
ID Q9LNP2
description Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
trembl
ID A0A067L0N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24767 PE=3 SV=1
Gene Ontology
ID GO:0008152
description pentatricopeptide repeat-containing protein at1g17630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_050 0.0 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
2 Hb_168697_010 0.081682874 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
3 Hb_001141_390 0.0900484651 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
4 Hb_048219_010 0.0968019679 - - coronatine-insensitive 1 [Hevea brasiliensis]
5 Hb_012395_220 0.1042338994 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
6 Hb_002813_050 0.1075831445 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
7 Hb_005015_070 0.108398745 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
8 Hb_000213_100 0.1098758762 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
9 Hb_012807_050 0.1111418473 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
10 Hb_000140_230 0.1126903256 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
11 Hb_000025_520 0.1153301363 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
12 Hb_002218_010 0.115443776 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
13 Hb_008775_040 0.1160082035 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
14 Hb_022250_090 0.1167256614 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
15 Hb_004767_050 0.1172034722 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
16 Hb_010874_020 0.1180070015 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
17 Hb_000204_210 0.1216042778 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
18 Hb_000107_420 0.1221760013 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
19 Hb_000264_320 0.1223556772 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
20 Hb_000175_220 0.1236366897 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]

Gene co-expression network

sample Hb_000680_050 Hb_000680_050 Hb_168697_010 Hb_168697_010 Hb_000680_050--Hb_168697_010 Hb_001141_390 Hb_001141_390 Hb_000680_050--Hb_001141_390 Hb_048219_010 Hb_048219_010 Hb_000680_050--Hb_048219_010 Hb_012395_220 Hb_012395_220 Hb_000680_050--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_000680_050--Hb_002813_050 Hb_005015_070 Hb_005015_070 Hb_000680_050--Hb_005015_070 Hb_000140_230 Hb_000140_230 Hb_168697_010--Hb_000140_230 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_168697_010--Hb_048219_010 Hb_003020_050 Hb_003020_050 Hb_168697_010--Hb_003020_050 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_001141_390--Hb_048219_010 Hb_001141_390--Hb_005015_070 Hb_001584_150 Hb_001584_150 Hb_001141_390--Hb_001584_150 Hb_012564_030 Hb_012564_030 Hb_048219_010--Hb_012564_030 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_001856_230 Hb_001856_230 Hb_048219_010--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010 Hb_012807_050 Hb_012807_050 Hb_012395_220--Hb_012807_050 Hb_012395_220--Hb_002813_050 Hb_010172_090 Hb_010172_090 Hb_012395_220--Hb_010172_090 Hb_000500_040 Hb_000500_040 Hb_012395_220--Hb_000500_040 Hb_012395_220--Hb_001141_390 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_000859_060 Hb_000859_060 Hb_002813_050--Hb_000859_060 Hb_004785_060 Hb_004785_060 Hb_002813_050--Hb_004785_060 Hb_002813_050--Hb_001141_390 Hb_002813_050--Hb_012807_050 Hb_000696_150 Hb_000696_150 Hb_005015_070--Hb_000696_150 Hb_004374_070 Hb_004374_070 Hb_005015_070--Hb_004374_070 Hb_005015_070--Hb_010172_090 Hb_000866_220 Hb_000866_220 Hb_005015_070--Hb_000866_220 Hb_005015_070--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82411 7.17054 1.29045 2.34113 2.56022 4.03333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06239 3.6112 7.74068 2.991 1.2107

CAGE analysis