Hb_000680_120

Information

Type -
Description -
Location Contig680: 109057-113759
Sequence    

Annotation

kegg
ID rcu:RCOM_0312340
description hypothetical protein
nr
ID XP_012068985.1
description PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SN39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0312340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53753: 109122-113708 , PASA_asmbl_53755: 111100-111220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_120 0.0 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
2 Hb_000137_010 0.0485169341 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
3 Hb_000230_460 0.0800133686 - - Speckle-type POZ protein, putative [Ricinus communis]
4 Hb_000258_420 0.0844415567 - - sucrose transporter 2A [Hevea brasiliensis]
5 Hb_000120_810 0.0868661083 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
6 Hb_178968_060 0.0873372448 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
7 Hb_000788_030 0.0909039942 - - PREDICTED: dynamin-2A [Jatropha curcas]
8 Hb_003428_090 0.0912016639 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
9 Hb_005305_100 0.0912739396 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_004531_150 0.0914248273 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
11 Hb_000711_010 0.0915558897 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
12 Hb_003058_140 0.0917562276 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000704_030 0.0919602599 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
14 Hb_001511_090 0.0928574971 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
15 Hb_000476_060 0.0929809655 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000787_080 0.0935208405 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
17 Hb_003626_070 0.0937584479 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
18 Hb_060094_010 0.0941014443 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_002965_050 0.0941362246 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
20 Hb_001729_020 0.0949263015 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000680_120 Hb_000680_120 Hb_000137_010 Hb_000137_010 Hb_000680_120--Hb_000137_010 Hb_000230_460 Hb_000230_460 Hb_000680_120--Hb_000230_460 Hb_000258_420 Hb_000258_420 Hb_000680_120--Hb_000258_420 Hb_000120_810 Hb_000120_810 Hb_000680_120--Hb_000120_810 Hb_178968_060 Hb_178968_060 Hb_000680_120--Hb_178968_060 Hb_000788_030 Hb_000788_030 Hb_000680_120--Hb_000788_030 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000137_010--Hb_000230_460 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090 Hb_000230_460--Hb_178968_060 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000176_020 Hb_000176_020 Hb_000230_460--Hb_000176_020 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_033152_090 Hb_033152_090 Hb_000258_420--Hb_033152_090 Hb_003777_130 Hb_003777_130 Hb_000258_420--Hb_003777_130 Hb_001699_010 Hb_001699_010 Hb_000258_420--Hb_001699_010 Hb_002272_240 Hb_002272_240 Hb_000258_420--Hb_002272_240 Hb_004531_150 Hb_004531_150 Hb_000258_420--Hb_004531_150 Hb_000704_030 Hb_000704_030 Hb_000120_810--Hb_000704_030 Hb_026198_010 Hb_026198_010 Hb_000120_810--Hb_026198_010 Hb_004079_130 Hb_004079_130 Hb_000120_810--Hb_004079_130 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_000120_810--Hb_189216_010 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_004324_360 Hb_004324_360 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36277 10.7585 13.1578 10.6734 3.35959 2.74348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20212 5.22247 3.62966 5.48354 9.44738

CAGE analysis