Hb_000680_160

Information

Type -
Description -
Location Contig680: 176483-178561
Sequence    

Annotation

kegg
ID tcc:TCM_029013
description DNA double-strand break repair rad50 ATPase isoform 1
nr
ID XP_012069000.1
description PREDICTED: protein FLX-like 3 [Jatropha curcas]
swissprot
ID Q9C717
description Protein FLX-like 3 OS=Arabidopsis thaliana GN=FLXL3 PE=1 SV=1
trembl
ID A0A067L9M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24788 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53760: 178167-197151 , PASA_asmbl_53761: 174965-178466
cDNA
(Sanger)
(ID:Location)		 046_N20.ab1: 174965-177425

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_160 0.0 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
2 Hb_000032_270 0.0637127046 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
3 Hb_002078_350 0.0680032048 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_003428_030 0.0689690145 - - tRNA, putative [Ricinus communis]
5 Hb_003525_010 0.0709989497 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
6 Hb_001579_220 0.0735343187 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
7 Hb_005188_080 0.0760551123 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_000092_170 0.0771574493 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
9 Hb_005725_250 0.0773843801 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
10 Hb_008554_130 0.0788471479 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
11 Hb_007691_030 0.0803118942 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
12 Hb_000032_520 0.0823296182 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
13 Hb_000099_080 0.0829001498 - - kinesin light chain, putative [Ricinus communis]
14 Hb_003125_120 0.0829530979 - - PREDICTED: TITAN-like protein [Jatropha curcas]
15 Hb_001828_060 0.0835460153 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
16 Hb_000003_320 0.0838433538 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
17 Hb_009558_030 0.0841813065 - - myb3r3, putative [Ricinus communis]
18 Hb_000907_110 0.0855534782 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
19 Hb_000220_220 0.0856611558 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
20 Hb_000130_410 0.0856867255 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]

Gene co-expression network

sample Hb_000680_160 Hb_000680_160 Hb_000032_270 Hb_000032_270 Hb_000680_160--Hb_000032_270 Hb_002078_350 Hb_002078_350 Hb_000680_160--Hb_002078_350 Hb_003428_030 Hb_003428_030 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_001579_220 Hb_001579_220 Hb_000680_160--Hb_001579_220 Hb_005188_080 Hb_005188_080 Hb_000680_160--Hb_005188_080 Hb_000032_270--Hb_003428_030 Hb_003057_100 Hb_003057_100 Hb_000032_270--Hb_003057_100 Hb_005846_040 Hb_005846_040 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_007691_030 Hb_007691_030 Hb_000032_270--Hb_007691_030 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_003428_030--Hb_007691_030 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_005188_080--Hb_000015_040 Hb_005188_080--Hb_002078_350 Hb_001545_170 Hb_001545_170 Hb_005188_080--Hb_001545_170 Hb_005188_080--Hb_001579_220 Hb_000645_090 Hb_000645_090 Hb_005188_080--Hb_000645_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0713 39.0552 19.4073 33.7237 41.4657 42.1129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.8195 62.8837 33.8221 37.1646 31.6652

CAGE analysis