Hb_000683_090

Information

Type -
Description -
Location Contig683: 83537-84649
Sequence    

Annotation

kegg
ID bvg:104904963
description stress enhanced protein 1, chloroplastic
nr
ID KEH44113.1
description stress enhanced protein [Medicago truncatula]
swissprot
ID Q9M7I9
description Stress enhanced protein 1, chloroplastic OS=Arabidopsis thaliana GN=SEP1 PE=2 SV=1
trembl
ID A0A072VRP5
description Stress enhanced protein OS=Medicago truncatula GN=MTR_1g107490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53902: 84129-87460 , PASA_asmbl_53903: 83932-84713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000683_090 0.0 - - stress enhanced protein [Medicago truncatula]
2 Hb_007447_020 0.1310333951 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
3 Hb_005318_020 0.1461886814 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
4 Hb_008096_020 0.1599920224 - - -
5 Hb_031866_050 0.1687264979 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
6 Hb_001222_040 0.1703285055 - - -
7 Hb_169170_010 0.1741661403 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
8 Hb_003030_040 0.1834129752 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
9 Hb_003656_150 0.1872240499 - - -
10 Hb_007188_030 0.1892815689 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
11 Hb_006995_010 0.1930000972 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
12 Hb_005107_020 0.1994842387 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
13 Hb_000340_330 0.2001178141 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
14 Hb_000084_130 0.2006852996 - - -
15 Hb_001231_070 0.2013634729 - - -
16 Hb_007083_020 0.2071984926 - - hypothetical protein F775_15403 [Aegilops tauschii]
17 Hb_068014_010 0.2103429824 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
18 Hb_002450_130 0.2113649972 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
19 Hb_002815_050 0.2125800466 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
20 Hb_060458_010 0.2151968133 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000683_090 Hb_000683_090 Hb_007447_020 Hb_007447_020 Hb_000683_090--Hb_007447_020 Hb_005318_020 Hb_005318_020 Hb_000683_090--Hb_005318_020 Hb_008096_020 Hb_008096_020 Hb_000683_090--Hb_008096_020 Hb_031866_050 Hb_031866_050 Hb_000683_090--Hb_031866_050 Hb_001222_040 Hb_001222_040 Hb_000683_090--Hb_001222_040 Hb_169170_010 Hb_169170_010 Hb_000683_090--Hb_169170_010 Hb_007447_020--Hb_031866_050 Hb_007447_020--Hb_005318_020 Hb_007447_020--Hb_169170_010 Hb_122567_020 Hb_122567_020 Hb_007447_020--Hb_122567_020 Hb_079978_010 Hb_079978_010 Hb_007447_020--Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_002450_130 Hb_002450_130 Hb_008096_020--Hb_002450_130 Hb_002972_060 Hb_002972_060 Hb_008096_020--Hb_002972_060 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_003030_040 Hb_003030_040 Hb_031866_050--Hb_003030_040 Hb_031866_050--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_031866_050--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_031866_050--Hb_177103_010 Hb_001222_040--Hb_169170_010 Hb_001222_040--Hb_006995_010 Hb_000082_020 Hb_000082_020 Hb_001222_040--Hb_000082_020 Hb_001231_070 Hb_001231_070 Hb_001222_040--Hb_001231_070 Hb_001222_040--Hb_008096_020 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_169170_010--Hb_007188_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.686978 0.103132 0.184505 5.34103 1.02388 9.78451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27316 0.42943 0.975295 0.67127 0.355224

CAGE analysis