Hb_000683_100

Information

Type -
Description -
Location Contig683: 85433-87527
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18570g
description POPTRDRAFT_716296; ADP-ribosylation factor family protein
nr
ID KDP47141.1
description hypothetical protein JCGZ_22137 [Jatropha curcas]
swissprot
ID P51823
description ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2
trembl
ID A0A067LF90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22137 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor a1f isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53902: 84129-87460 , PASA_asmbl_53903: 83932-84713 , PASA_asmbl_53904: 85510-87227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000683_100 0.0 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
2 Hb_001969_020 0.1180024178 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
3 Hb_000796_020 0.1207921859 - - ADP-ribosylation factor [Phaseolus vulgaris]
4 Hb_002960_130 0.1301277673 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
5 Hb_148130_020 0.1304655624 - - -
6 Hb_010577_010 0.1316859199 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
7 Hb_091349_010 0.1343125951 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
8 Hb_000062_090 0.1375197591 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
9 Hb_001747_030 0.14114519 - - hypothetical protein F383_08210 [Gossypium arboreum]
10 Hb_122636_010 0.1424555695 - - dienelactone hydrolase family protein [Populus trichocarpa]
11 Hb_000008_190 0.1462396729 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
12 Hb_000671_130 0.1477726564 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
13 Hb_002133_020 0.147903457 - - conserved hypothetical protein [Ricinus communis]
14 Hb_019181_030 0.1491184979 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
15 Hb_002781_030 0.1497172945 - - protein binding protein, putative [Ricinus communis]
16 Hb_000402_130 0.1519332367 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
17 Hb_000016_060 0.1524044778 - - mads box protein, putative [Ricinus communis]
18 Hb_002660_110 0.1536540343 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
19 Hb_030992_010 0.1545870777 - - acetylornithine aminotransferase, putative [Ricinus communis]
20 Hb_001609_040 0.1560839886 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]

Gene co-expression network

sample Hb_000683_100 Hb_000683_100 Hb_001969_020 Hb_001969_020 Hb_000683_100--Hb_001969_020 Hb_000796_020 Hb_000796_020 Hb_000683_100--Hb_000796_020 Hb_002960_130 Hb_002960_130 Hb_000683_100--Hb_002960_130 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_010577_010 Hb_010577_010 Hb_000683_100--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_000683_100--Hb_091349_010 Hb_001969_020--Hb_010577_010 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_000369_120 Hb_000369_120 Hb_001969_020--Hb_000369_120 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_000776_060 Hb_000776_060 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_004453_070 Hb_004453_070 Hb_000796_020--Hb_004453_070 Hb_000062_090 Hb_000062_090 Hb_000796_020--Hb_000062_090 Hb_019181_030 Hb_019181_030 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020 Hb_002781_030 Hb_002781_030 Hb_148130_020--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_148130_020--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_148130_020--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_148130_020--Hb_000928_190 Hb_000258_240 Hb_000258_240 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_010577_010--Hb_091349_010 Hb_010577_010--Hb_122636_010 Hb_010931_140 Hb_010931_140 Hb_010577_010--Hb_010931_140 Hb_007574_070 Hb_007574_070 Hb_010577_010--Hb_007574_070 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.407268 0.507416 0.879921 4.7837 0.196927 1.153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.877739 1.19188 1.23265 1.0205 0.745311

CAGE analysis