Hb_000684_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig684: 38316-40607
Sequence    

Annotation

kegg
ID rcu:RCOM_1356760
description nucleic acid binding protein, putative
nr
ID XP_002519549.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q700D2
description Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1
trembl
ID B9S0N0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1356760 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein jackdaw-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53945: 38184-39046 , PASA_asmbl_53946: 39602-40115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_010 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000120_980 0.0495683306 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
3 Hb_005333_100 0.0807026316 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000876_050 0.0883493308 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
5 Hb_005542_110 0.0989229067 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
6 Hb_001675_130 0.1177250344 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
7 Hb_007709_010 0.1249796435 - - -
8 Hb_004055_100 0.1255098271 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
9 Hb_000086_370 0.1263432947 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
10 Hb_001862_060 0.1266257017 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
11 Hb_022108_010 0.1313170542 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
12 Hb_000221_170 0.1320619332 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
13 Hb_000255_020 0.1339147458 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
14 Hb_000976_060 0.1371418169 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_000489_020 0.1372977462 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
16 Hb_010813_030 0.1377979455 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
17 Hb_000649_280 0.1380566961 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
18 Hb_002475_100 0.1426128335 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
19 Hb_011174_100 0.1440738283 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_001623_470 0.1447527448 - - ammonium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_010 Hb_000684_010 Hb_000120_980 Hb_000120_980 Hb_000684_010--Hb_000120_980 Hb_005333_100 Hb_005333_100 Hb_000684_010--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_000684_010--Hb_000876_050 Hb_005542_110 Hb_005542_110 Hb_000684_010--Hb_005542_110 Hb_001675_130 Hb_001675_130 Hb_000684_010--Hb_001675_130 Hb_007709_010 Hb_007709_010 Hb_000684_010--Hb_007709_010 Hb_000120_980--Hb_005333_100 Hb_000120_980--Hb_000876_050 Hb_000120_980--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_000120_980--Hb_000086_370 Hb_002475_100 Hb_002475_100 Hb_000120_980--Hb_002475_100 Hb_000976_060 Hb_000976_060 Hb_005333_100--Hb_000976_060 Hb_001838_010 Hb_001838_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_000221_170 Hb_000221_170 Hb_000876_050--Hb_000221_170 Hb_000876_050--Hb_005333_100 Hb_000876_050--Hb_005542_110 Hb_010813_030 Hb_010813_030 Hb_000876_050--Hb_010813_030 Hb_004055_100 Hb_004055_100 Hb_005542_110--Hb_004055_100 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_005542_110--Hb_000976_060 Hb_000254_150 Hb_000254_150 Hb_001675_130--Hb_000254_150 Hb_007919_030 Hb_007919_030 Hb_001675_130--Hb_007919_030 Hb_003767_010 Hb_003767_010 Hb_001675_130--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_001675_130--Hb_000649_280 Hb_001675_130--Hb_010813_030 Hb_007709_010--Hb_011174_100 Hb_000343_260 Hb_000343_260 Hb_007709_010--Hb_000343_260 Hb_007709_010--Hb_005542_110 Hb_007709_010--Hb_000086_370 Hb_007709_010--Hb_000876_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0314369 6.46988 0.575256 1.24451 0.0196211 0.0101375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.66296 2.09648

CAGE analysis