Hb_000684_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig684: 52624-54043
Sequence    

Annotation

kegg
ID rcu:RCOM_1356970
description transcription factor, putative
nr
ID XP_002519550.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GY42
description NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1
trembl
ID B9S0N1
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1356970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_020 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_110218_010 0.0927353722 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
3 Hb_004200_040 0.0935135425 - - laccase, putative [Ricinus communis]
4 Hb_009012_020 0.0941569502 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
5 Hb_004463_040 0.0945670332 - - -
6 Hb_002553_120 0.0962066039 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
7 Hb_003900_050 0.102719072 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
8 Hb_000140_260 0.1201825378 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
9 Hb_000286_190 0.1213973135 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
10 Hb_000205_210 0.1276934632 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
11 Hb_000920_360 0.1287238958 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
12 Hb_006446_060 0.1303297859 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
13 Hb_007894_260 0.131825005 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_161393_010 0.1325177883 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_010931_010 0.1348824013 - - PREDICTED: protein YLS9-like [Jatropha curcas]
16 Hb_001902_180 0.1356666434 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
17 Hb_000976_020 0.1362437623 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_108884_020 0.1365654258 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
19 Hb_000984_080 0.1382782455 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_000101_050 0.1389366578 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_020 Hb_000684_020 Hb_110218_010 Hb_110218_010 Hb_000684_020--Hb_110218_010 Hb_004200_040 Hb_004200_040 Hb_000684_020--Hb_004200_040 Hb_009012_020 Hb_009012_020 Hb_000684_020--Hb_009012_020 Hb_004463_040 Hb_004463_040 Hb_000684_020--Hb_004463_040 Hb_002553_120 Hb_002553_120 Hb_000684_020--Hb_002553_120 Hb_003900_050 Hb_003900_050 Hb_000684_020--Hb_003900_050 Hb_110218_010--Hb_009012_020 Hb_110218_010--Hb_004463_040 Hb_110218_010--Hb_003900_050 Hb_000976_020 Hb_000976_020 Hb_110218_010--Hb_000976_020 Hb_110218_010--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004200_040--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_004200_040--Hb_000205_210 Hb_004200_040--Hb_003900_050 Hb_004200_040--Hb_004463_040 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010 Hb_001902_180 Hb_001902_180 Hb_009012_020--Hb_001902_180 Hb_000046_060 Hb_000046_060 Hb_009012_020--Hb_000046_060 Hb_009012_020--Hb_004463_040 Hb_000411_060 Hb_000411_060 Hb_009012_020--Hb_000411_060 Hb_004463_040--Hb_003900_050 Hb_004463_040--Hb_000976_020 Hb_020332_040 Hb_020332_040 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010 Hb_006446_060 Hb_006446_060 Hb_002553_120--Hb_006446_060 Hb_161393_010 Hb_161393_010 Hb_002553_120--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_002553_120--Hb_005653_020 Hb_002081_040 Hb_002081_040 Hb_002553_120--Hb_002081_040 Hb_001621_140 Hb_001621_140 Hb_002553_120--Hb_001621_140 Hb_003900_050--Hb_000205_210 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.931871 0.0798699 0.207348 0.0325136 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.08281 0.258297

CAGE analysis