Hb_000684_090

Information

Type transcription factor
Description TF Family: S1Fa-like
Location Contig684: 161207-163651
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53966: 161085-163662 , PASA_asmbl_53967: 161202-161707
cDNA
(Sanger)
(ID:Location)		 026_M20.ab1: 161167-163526 , 032_E07.ab1: 161131-163495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_090 0.0 transcription factor TF Family: S1Fa-like -
2 Hb_001828_090 0.073251498 - - prohibitin, putative [Ricinus communis]
3 Hb_000270_270 0.0745853767 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
4 Hb_001512_070 0.0764296225 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
5 Hb_007101_150 0.0780751714 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
6 Hb_000015_080 0.0812963071 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
7 Hb_011360_140 0.0839907136 - - 40S ribosomal protein S19, putative [Ricinus communis]
8 Hb_002296_060 0.0848399365 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
9 Hb_000392_270 0.0852385347 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
10 Hb_001379_060 0.086279037 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
11 Hb_002603_100 0.0863826177 - - ATATH9, putative [Ricinus communis]
12 Hb_000798_030 0.0866245984 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
13 Hb_001257_080 0.0869803022 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003939_080 0.0893724642 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000473_040 0.0903144381 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
16 Hb_011381_060 0.090447579 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
17 Hb_004931_090 0.0922581126 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
18 Hb_007741_050 0.0922612582 - - vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_002007_060 0.0925582946 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
20 Hb_001235_190 0.0926199272 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000684_090 Hb_000684_090 Hb_001828_090 Hb_001828_090 Hb_000684_090--Hb_001828_090 Hb_000270_270 Hb_000270_270 Hb_000684_090--Hb_000270_270 Hb_001512_070 Hb_001512_070 Hb_000684_090--Hb_001512_070 Hb_007101_150 Hb_007101_150 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_011360_140 Hb_011360_140 Hb_000684_090--Hb_011360_140 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001828_090--Hb_001512_070 Hb_153112_020 Hb_153112_020 Hb_000270_270--Hb_153112_020 Hb_002205_080 Hb_002205_080 Hb_000270_270--Hb_002205_080 Hb_002874_190 Hb_002874_190 Hb_000270_270--Hb_002874_190 Hb_004931_090 Hb_004931_090 Hb_000270_270--Hb_004931_090 Hb_000331_080 Hb_000331_080 Hb_000270_270--Hb_000331_080 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_001512_070--Hb_007101_150 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_002868_010 Hb_002868_010 Hb_001512_070--Hb_002868_010 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_002928_130 Hb_002928_130 Hb_000015_080--Hb_002928_130 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000392_440 Hb_000392_440 Hb_000015_080--Hb_000392_440 Hb_005993_040 Hb_005993_040 Hb_000015_080--Hb_005993_040 Hb_000392_270 Hb_000392_270 Hb_000015_080--Hb_000392_270 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_011360_140--Hb_000392_440 Hb_011360_140--Hb_005993_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
168.217 71.6357 96.2979 42.4727 175.899 170.457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
249.607 319.938 176.289 43.6573 40.9344

CAGE analysis