Hb_000684_100

Information

Type -
Description -
Location Contig684: 163843-166537
Sequence    

Annotation

kegg
ID rcu:RCOM_0819280
description hypothetical protein
nr
ID XP_012082316.1
description PREDICTED: cell number regulator 8 [Jatropha curcas]
swissprot
ID B4FUS3
description Cell number regulator 8 OS=Zea mays GN=CNR8 PE=2 SV=1
trembl
ID A0A067K1Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53968: 163704-166590 , PASA_asmbl_53969: 164122-164532
cDNA
(Sanger)
(ID:Location)		 023_P02.ab1: 164005-166513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_100 0.0 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
2 Hb_000979_060 0.0934969921 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
3 Hb_004125_060 0.1057802619 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000009_220 0.1063702747 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
5 Hb_001369_030 0.1175726517 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
6 Hb_000086_430 0.117870407 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
7 Hb_000062_360 0.1233617756 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
8 Hb_001322_020 0.1256398931 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
9 Hb_014231_020 0.1306766097 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
10 Hb_000076_100 0.1318450451 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
11 Hb_015026_020 0.1329154823 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
12 Hb_143813_020 0.1338635375 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
13 Hb_002600_130 0.1352527104 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
14 Hb_000363_350 0.1358734451 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
15 Hb_000345_290 0.1371938471 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000152_760 0.138499329 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000421_230 0.1395691847 - - retinal degeneration B beta, putative [Ricinus communis]
18 Hb_000212_300 0.1421407313 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
19 Hb_000098_150 0.1430349091 - - DNA helicase hus2, putative [Ricinus communis]
20 Hb_004267_060 0.1450747952 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_100 Hb_000684_100 Hb_000979_060 Hb_000979_060 Hb_000684_100--Hb_000979_060 Hb_004125_060 Hb_004125_060 Hb_000684_100--Hb_004125_060 Hb_000009_220 Hb_000009_220 Hb_000684_100--Hb_000009_220 Hb_001369_030 Hb_001369_030 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360 Hb_005194_020 Hb_005194_020 Hb_000979_060--Hb_005194_020 Hb_002311_480 Hb_002311_480 Hb_000979_060--Hb_002311_480 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000579_190 Hb_000579_190 Hb_000979_060--Hb_000579_190 Hb_000421_230 Hb_000421_230 Hb_004125_060--Hb_000421_230 Hb_161901_020 Hb_161901_020 Hb_004125_060--Hb_161901_020 Hb_004125_060--Hb_000009_220 Hb_004125_060--Hb_000979_060 Hb_012545_030 Hb_012545_030 Hb_004125_060--Hb_012545_030 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000009_220--Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_000212_300 Hb_000212_300 Hb_001369_030--Hb_000212_300 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540 Hb_000048_080 Hb_000048_080 Hb_000086_430--Hb_000048_080 Hb_001500_120 Hb_001500_120 Hb_000086_430--Hb_001500_120 Hb_000086_430--Hb_001009_120 Hb_001558_060 Hb_001558_060 Hb_000086_430--Hb_001558_060 Hb_004225_060 Hb_004225_060 Hb_000086_430--Hb_004225_060 Hb_000062_360--Hb_000212_300 Hb_000062_360--Hb_001322_020 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.808 229.282 484.265 109.346 70.7191 37.633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.3696 76.8501 58.196 76.4107 76.0997

CAGE analysis