Hb_000684_110

Information

Type -
Description -
Location Contig684: 179346-180213
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13250g
description hypothetical protein
nr
ID XP_006381482.1
description hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MT98
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13250g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53971: 179369-180226
cDNA
(Sanger)
(ID:Location)		 001_H12.ab1: 179369-180226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_110 0.0 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
2 Hb_084812_010 0.0512623348 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
3 Hb_000739_190 0.0858759881 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_004112_070 0.091462797 - - -
5 Hb_001110_060 0.0949538957 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_003427_070 0.0961687636 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
7 Hb_000139_390 0.096642748 - - -
8 Hb_016911_010 0.106516892 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
9 Hb_000922_050 0.1086565049 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
10 Hb_000934_120 0.1139118851 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
11 Hb_000085_410 0.1169108305 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
12 Hb_009062_020 0.1171864925 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
13 Hb_000139_520 0.1183625612 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
14 Hb_009079_020 0.1195125742 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
15 Hb_003032_110 0.1203842914 - - -
16 Hb_000724_060 0.1207773405 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
17 Hb_000227_300 0.120841658 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000175_370 0.1211132279 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
19 Hb_051212_020 0.1220934394 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
20 Hb_000861_060 0.1240215577 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000684_110 Hb_000684_110 Hb_084812_010 Hb_084812_010 Hb_000684_110--Hb_084812_010 Hb_000739_190 Hb_000739_190 Hb_000684_110--Hb_000739_190 Hb_004112_070 Hb_004112_070 Hb_000684_110--Hb_004112_070 Hb_001110_060 Hb_001110_060 Hb_000684_110--Hb_001110_060 Hb_003427_070 Hb_003427_070 Hb_000684_110--Hb_003427_070 Hb_000139_390 Hb_000139_390 Hb_000684_110--Hb_000139_390 Hb_084812_010--Hb_001110_060 Hb_084812_010--Hb_004112_070 Hb_000861_060 Hb_000861_060 Hb_084812_010--Hb_000861_060 Hb_000586_110 Hb_000586_110 Hb_084812_010--Hb_000586_110 Hb_026218_010 Hb_026218_010 Hb_084812_010--Hb_026218_010 Hb_000739_190--Hb_003427_070 Hb_030360_010 Hb_030360_010 Hb_000739_190--Hb_030360_010 Hb_039075_010 Hb_039075_010 Hb_000739_190--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000739_190--Hb_000310_040 Hb_000739_190--Hb_001110_060 Hb_004112_070--Hb_000139_390 Hb_000000_320 Hb_000000_320 Hb_004112_070--Hb_000000_320 Hb_005111_020 Hb_005111_020 Hb_004112_070--Hb_005111_020 Hb_004112_070--Hb_001110_060 Hb_001022_070 Hb_001022_070 Hb_004112_070--Hb_001022_070 Hb_001408_080 Hb_001408_080 Hb_001110_060--Hb_001408_080 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_084304_010 Hb_084304_010 Hb_003427_070--Hb_084304_010 Hb_000922_050 Hb_000922_050 Hb_003427_070--Hb_000922_050 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_003427_070--Hb_039075_010 Hb_004474_070 Hb_004474_070 Hb_000139_390--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_000139_390--Hb_001953_010 Hb_000175_370 Hb_000175_370 Hb_000139_390--Hb_000175_370 Hb_000120_560 Hb_000120_560 Hb_000139_390--Hb_000120_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.9939 30.9244 94.0873 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0288311 12.3089

CAGE analysis