Hb_000684_130

Information

Type -
Description -
Location Contig684: 191216-193746
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53974: 191045-204209 , PASA_asmbl_53976: 188144-193639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_130 0.0 - - -
2 Hb_013399_080 0.2209066865 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
3 Hb_005843_160 0.2218639906 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
4 Hb_002863_090 0.2319948862 desease resistance Gene Name: Speriolin_N hypothetical protein JCGZ_06191 [Jatropha curcas]
5 Hb_019592_010 0.2320808439 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_003872_010 0.2323051274 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
7 Hb_097646_010 0.233374311 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
8 Hb_004097_120 0.234249379 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_104812_010 0.2380639043 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
10 Hb_000091_060 0.2391634748 - - PREDICTED: galactose oxidase [Jatropha curcas]
11 Hb_002232_300 0.2403564335 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_029921_020 0.2412523124 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
13 Hb_007603_020 0.2425978842 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
14 Hb_004374_080 0.2441458036 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
15 Hb_000566_100 0.2449933953 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
16 Hb_000258_290 0.2455826138 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
17 Hb_000096_080 0.2536952205 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
18 Hb_000516_040 0.2547889819 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
19 Hb_000163_280 0.2569227126 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
20 Hb_002000_060 0.2600180461 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_130 Hb_000684_130 Hb_013399_080 Hb_013399_080 Hb_000684_130--Hb_013399_080 Hb_005843_160 Hb_005843_160 Hb_000684_130--Hb_005843_160 Hb_002863_090 Hb_002863_090 Hb_000684_130--Hb_002863_090 Hb_019592_010 Hb_019592_010 Hb_000684_130--Hb_019592_010 Hb_003872_010 Hb_003872_010 Hb_000684_130--Hb_003872_010 Hb_097646_010 Hb_097646_010 Hb_000684_130--Hb_097646_010 Hb_000397_120 Hb_000397_120 Hb_013399_080--Hb_000397_120 Hb_000096_080 Hb_000096_080 Hb_013399_080--Hb_000096_080 Hb_000069_710 Hb_000069_710 Hb_013399_080--Hb_000069_710 Hb_000207_100 Hb_000207_100 Hb_013399_080--Hb_000207_100 Hb_022174_010 Hb_022174_010 Hb_013399_080--Hb_022174_010 Hb_000943_030 Hb_000943_030 Hb_013399_080--Hb_000943_030 Hb_000091_060 Hb_000091_060 Hb_005843_160--Hb_000091_060 Hb_006831_070 Hb_006831_070 Hb_005843_160--Hb_006831_070 Hb_091761_010 Hb_091761_010 Hb_005843_160--Hb_091761_010 Hb_008511_060 Hb_008511_060 Hb_005843_160--Hb_008511_060 Hb_074197_020 Hb_074197_020 Hb_005843_160--Hb_074197_020 Hb_000258_290 Hb_000258_290 Hb_005843_160--Hb_000258_290 Hb_005408_060 Hb_005408_060 Hb_002863_090--Hb_005408_060 Hb_133748_010 Hb_133748_010 Hb_002863_090--Hb_133748_010 Hb_002863_090--Hb_003872_010 Hb_024698_010 Hb_024698_010 Hb_002863_090--Hb_024698_010 Hb_000424_080 Hb_000424_080 Hb_002863_090--Hb_000424_080 Hb_007749_010 Hb_007749_010 Hb_019592_010--Hb_007749_010 Hb_004055_110 Hb_004055_110 Hb_019592_010--Hb_004055_110 Hb_019592_010--Hb_000424_080 Hb_000098_020 Hb_000098_020 Hb_019592_010--Hb_000098_020 Hb_000155_060 Hb_000155_060 Hb_019592_010--Hb_000155_060 Hb_004374_080 Hb_004374_080 Hb_003872_010--Hb_004374_080 Hb_007803_060 Hb_007803_060 Hb_003872_010--Hb_007803_060 Hb_000270_870 Hb_000270_870 Hb_003872_010--Hb_000270_870 Hb_002000_060 Hb_002000_060 Hb_003872_010--Hb_002000_060 Hb_000661_110 Hb_000661_110 Hb_003872_010--Hb_000661_110 Hb_147505_010 Hb_147505_010 Hb_003872_010--Hb_147505_010 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_097646_010--Hb_024698_010 Hb_003001_040 Hb_003001_040 Hb_097646_010--Hb_003001_040 Hb_000056_010 Hb_000056_010 Hb_097646_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00202 1.23499 1.23565 2.62676 2.93992 1.77196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.00361 0.160409 1.88143

CAGE analysis