Hb_000684_180

Information

Type -
Description -
Location Contig684: 210829-217760
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08790g
description POPTRDRAFT_576659; hypothetical protein
nr
ID XP_012082309.1
description PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
swissprot
ID F4KF65
description Importin subunit alpha-9 OS=Arabidopsis thaliana GN=IMPA9 PE=3 SV=1
trembl
ID A0A067JYW3
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_16476 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53981: 210848-217673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_180 0.0 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
2 Hb_000573_040 0.0722292584 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
3 Hb_000631_150 0.075748341 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
4 Hb_003352_050 0.0761909584 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
5 Hb_000134_360 0.0781810182 - - PREDICTED: protein gar2 [Jatropha curcas]
6 Hb_011644_020 0.0839108883 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
7 Hb_001195_030 0.0855662576 - - auxilin, putative [Ricinus communis]
8 Hb_000318_140 0.0873307618 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
9 Hb_009615_110 0.0888653159 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
10 Hb_025557_020 0.0901990248 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
11 Hb_003384_030 0.0902226366 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
12 Hb_009421_100 0.0904383675 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
13 Hb_002025_140 0.0913179543 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_002955_010 0.091355297 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
15 Hb_003777_220 0.091753164 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
16 Hb_000372_040 0.0930859367 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_006922_080 0.0961194555 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
18 Hb_174865_050 0.0962761837 - - PREDICTED: neuroguidin [Jatropha curcas]
19 Hb_000176_110 0.0964260952 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
20 Hb_079326_010 0.0964934525 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_180 Hb_000684_180 Hb_000573_040 Hb_000573_040 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000134_360 Hb_000134_360 Hb_000684_180--Hb_000134_360 Hb_011644_020 Hb_011644_020 Hb_000684_180--Hb_011644_020 Hb_001195_030 Hb_001195_030 Hb_000684_180--Hb_001195_030 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_002377_040 Hb_002377_040 Hb_003352_050--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_003352_050--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_003352_050--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_003352_050--Hb_000062_230 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000134_360--Hb_000849_100 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_003666_050 Hb_003666_050 Hb_001195_030--Hb_003666_050 Hb_001195_030--Hb_000540_140 Hb_174865_050 Hb_174865_050 Hb_001195_030--Hb_174865_050 Hb_025557_020 Hb_025557_020 Hb_001195_030--Hb_025557_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.4537 16.1746 9.92402 10.7599 96.81 97.9999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.0521 17.7378 30.8061 19.6251 9.77891

CAGE analysis