Hb_000684_200

Information

Type -
Description -
Location Contig684: 224646-229104
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13330g
description hypothetical protein
nr
ID XP_012082298.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067K9V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16469 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53983: 226578-226696 , PASA_asmbl_53984: 224850-229088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_200 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_010557_010 0.0917270618 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
3 Hb_004162_270 0.0918506035 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002811_250 0.0919629761 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
5 Hb_004837_100 0.0941492254 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
6 Hb_010098_040 0.0942569855 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
7 Hb_005181_120 0.0948981678 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000264_280 0.0967879632 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_142663_020 0.0985990063 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000834_060 0.0990786858 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003053_070 0.1002867901 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
12 Hb_000352_280 0.101056246 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
13 Hb_005784_030 0.1012132207 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
14 Hb_000395_010 0.1069789493 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
15 Hb_172426_060 0.1096814242 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
16 Hb_032631_030 0.1103785116 - - phosphatidic acid phosphatase, putative [Ricinus communis]
17 Hb_000019_080 0.1115019084 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
18 Hb_000803_170 0.1128012558 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
19 Hb_009393_130 0.112921832 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
20 Hb_003948_020 0.113347279 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]

Gene co-expression network

sample Hb_000684_200 Hb_000684_200 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_004162_270 Hb_004162_270 Hb_000684_200--Hb_004162_270 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_003053_070 Hb_003053_070 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_000803_170 Hb_002811_250--Hb_005181_120 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_000019_080 Hb_000019_080 Hb_004837_100--Hb_000019_080 Hb_004837_100--Hb_003053_070 Hb_004837_100--Hb_000395_010 Hb_001579_280 Hb_001579_280 Hb_004837_100--Hb_001579_280 Hb_004837_100--Hb_004162_270 Hb_010098_040--Hb_005181_120 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_010098_040--Hb_000679_080 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32368 4.83686 25.3946 13.6672 0.595535 0.844128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08757 2.90464 1.76032 4.89326 34.2922

CAGE analysis