Hb_000684_220

Information

Type -
Description -
Location Contig684: 239453-242604
Sequence    

Annotation

kegg
ID rcu:RCOM_0819600
description ATP binding protein, putative
nr
ID XP_012082289.1
description PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQC5
description Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1
trembl
ID A0A067JYN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16465 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53987: 237379-242600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_220 0.0 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_030565_050 0.1301496007 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
3 Hb_002774_120 0.1362349134 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
4 Hb_000246_130 0.1412589206 - - tubulin alpha chain, putative [Ricinus communis]
5 Hb_000330_020 0.143023375 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
6 Hb_000603_020 0.1456079193 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
7 Hb_000236_160 0.1458782908 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
8 Hb_000056_190 0.1535002005 - - hypothetical protein [Ricinus communis]
9 Hb_001102_160 0.1558633622 - - PREDICTED: galacturonokinase [Jatropha curcas]
10 Hb_001195_090 0.1611271634 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_000030_130 0.1612620649 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_020586_010 0.1631761069 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
13 Hb_000069_560 0.1655516374 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
14 Hb_084147_010 0.1657090379 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000271_220 0.1667101443 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
16 Hb_000349_200 0.1687787892 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
17 Hb_001195_130 0.1697769496 - - conserved hypothetical protein [Ricinus communis]
18 Hb_026527_010 0.1701225258 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
19 Hb_019516_060 0.1708396583 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
20 Hb_006570_090 0.1718304631 - - tubulin beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_220 Hb_000684_220 Hb_030565_050 Hb_030565_050 Hb_000684_220--Hb_030565_050 Hb_002774_120 Hb_002774_120 Hb_000684_220--Hb_002774_120 Hb_000246_130 Hb_000246_130 Hb_000684_220--Hb_000246_130 Hb_000330_020 Hb_000330_020 Hb_000684_220--Hb_000330_020 Hb_000603_020 Hb_000603_020 Hb_000684_220--Hb_000603_020 Hb_000236_160 Hb_000236_160 Hb_000684_220--Hb_000236_160 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_030565_050--Hb_000603_020 Hb_000363_260 Hb_000363_260 Hb_002774_120--Hb_000363_260 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_003929_190 Hb_003929_190 Hb_002774_120--Hb_003929_190 Hb_179960_010 Hb_179960_010 Hb_002774_120--Hb_179960_010 Hb_003540_120 Hb_003540_120 Hb_002774_120--Hb_003540_120 Hb_019516_060 Hb_019516_060 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_000056_190 Hb_000056_190 Hb_000330_020--Hb_000056_190 Hb_000330_020--Hb_030565_050 Hb_012762_060 Hb_012762_060 Hb_000330_020--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_000330_020--Hb_003680_030 Hb_000844_030 Hb_000844_030 Hb_000330_020--Hb_000844_030 Hb_000271_220 Hb_000271_220 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_000236_160--Hb_002774_120 Hb_000236_160--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_000236_160--Hb_000012_400 Hb_010812_110 Hb_010812_110 Hb_000236_160--Hb_010812_110 Hb_000236_160--Hb_030565_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67788 8.69953 13.2237 55.382 2.18167 3.82308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62652 1.09417 0.831009 4.8666 20.5909

CAGE analysis