Hb_000684_230

Information

Type -
Description -
Location Contig684: 251967-252687
Sequence    

Annotation

kegg
ID rcu:RCOM_0819610
description 40S ribosomal protein S23, putative
nr
ID XP_002523902.1
description 40S ribosomal protein S23, putative [Ricinus communis]
swissprot
ID P46297
description 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1
trembl
ID A0A067K9V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16464 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53988: 251209-252833
cDNA
(Sanger)
(ID:Location)		 004_A20.ab1: 251209-252725 , 021_F24.ab1: 251221-252725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_230 0.0 - - 40S ribosomal protein S23, putative [Ricinus communis]
2 Hb_008173_120 0.0723905346 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007193_100 0.0854933104 - - syntaxin family protein [Populus trichocarpa]
4 Hb_000024_080 0.087959839 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
5 Hb_000003_730 0.0879848942 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
6 Hb_007317_060 0.0889740748 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
7 Hb_000103_140 0.0903152285 - - ribosomal protein S3a [Populus trichocarpa]
8 Hb_004032_100 0.094855182 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
9 Hb_000771_100 0.0961120448 - - Os06g0527300 [Oryza sativa Japonica Group]
10 Hb_004007_100 0.0965830138 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
11 Hb_004128_190 0.0977963314 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
12 Hb_007441_270 0.099063606 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
13 Hb_004545_060 0.1004076159 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_025193_050 0.1014007993 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
15 Hb_009543_030 0.1014909643 - - prefoldin subunit 1 [Jatropha curcas]
16 Hb_003687_020 0.1015115675 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_010180_020 0.1017727974 - - hypothetical protein glysoja_030394 [Glycine soja]
18 Hb_093666_020 0.1021197659 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
19 Hb_000230_540 0.1022203286 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
20 Hb_000676_290 0.1027281089 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_230 Hb_000684_230 Hb_008173_120 Hb_008173_120 Hb_000684_230--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_007317_060 Hb_007317_060 Hb_000684_230--Hb_007317_060 Hb_000103_140 Hb_000103_140 Hb_000684_230--Hb_000103_140 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_008173_120--Hb_007193_100 Hb_008173_120--Hb_007317_060 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_008173_120--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_000087_020 Hb_000087_020 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_000003_730--Hb_004502_020 Hb_000380_010 Hb_000380_010 Hb_007317_060--Hb_000380_010 Hb_002259_150 Hb_002259_150 Hb_007317_060--Hb_002259_150 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_000103_140--Hb_000175_070 Hb_000103_140--Hb_007193_100 Hb_009543_030 Hb_009543_030 Hb_000103_140--Hb_009543_030 Hb_000103_140--Hb_063134_010 Hb_000103_140--Hb_029510_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
310.062 88.5335 100.374 280.835 358.499 819.673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
460.368 772.816 401.504 178.929 80.0703

CAGE analysis